View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_15 (Length: 523)
Name: NF7850A_low_15
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 7723362 - 7722857
Alignment:
| Q |
1 |
gttccaagtgaaagagtacaatcaacagaagaagacgaagaattcggagtgaagcaatatgtttcaggttcatgatcataaggtgtagcggaggagaata |
100 |
Q |
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| T |
7723362 |
gttccaagtgaaagagtacaatcaacagaagaagatgaagaattaggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggagaata |
7723263 |
T |
|
| Q |
101 |
acattgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaa |
200 |
Q |
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| T |
7723262 |
acattgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaa |
7723163 |
T |
|
| Q |
201 |
agagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgt |
300 |
Q |
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| T |
7723162 |
agagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgt |
7723073 |
T |
|
| Q |
301 |
cgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7723072 |
cgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaatta |
7722973 |
T |
|
| Q |
401 |
tagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttctatta |
500 |
Q |
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| T |
7722972 |
taaagcata--agagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttctatta |
7722875 |
T |
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| Q |
501 |
tatctctgcagaattact |
518 |
Q |
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|||||||||||||||||| |
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| T |
7722874 |
tatctctgcagaattact |
7722857 |
T |
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