View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_150 (Length: 322)
Name: NF7850A_low_150
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_150 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 127552 - 127858
Alignment:
| Q |
7 |
cagaattcattgaagttggatgccttaagtgggcggactggtccatgttctcagccaatgccccgtgccaaagagactctttctagagttgctgtcacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
127552 |
cagaattcattgaagttggatgccttaagtgggcggactggtccatgttctcagccaatgccccgtgccaaaaagactctttctagagttgctgtcacaa |
127651 |
T |
|
| Q |
107 |
gagcttcgtcagagaaatattcagatttttctttgccaagatcagatatttctaaggagcaatgtaaatcatgtgatatctgcagacgatttgagaatgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127652 |
gagcttcgtcagagaaatattcagatttttctttgccaagatcagatatttctaaggagcaacgtaaatcatgtgatatctgcagacgatttgagaatgt |
127751 |
T |
|
| Q |
207 |
gttaaatcctatcccagtatgctctggttgcaaggttttaggactcatccctggtccttttttatacttcgcctattttttatacttgcttctttatctt |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127752 |
gttaaatcatatcccagtatgctctggttgcaaggttttaggactcatccctggtccttttttatacttcgcctattttttatacttgcttctttatctt |
127851 |
T |
|
| Q |
307 |
tattctt |
313 |
Q |
| |
|
||||||| |
|
|
| T |
127852 |
tattctt |
127858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 33059909 - 33060169
Alignment:
| Q |
7 |
cagaattcattgaagttggatgccttaagtgggcggactggtccatgttctcagccaatgccccgtgccaaagagactctttctagagttgctgtcacaa |
106 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33059909 |
cagaattcattgaagttggatgctttatgtgggcggactggtccatgttctcagccaatgccccgtgccaaagagactctttctagagttgctgtcacta |
33060008 |
T |
|
| Q |
107 |
gagcttcgtcagagaaatattcagatttttctttgccaagatcagatatttctaaggagcaatgtaaatcatgtgatatctgcagacgatttgagaatgt |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33060009 |
gagcttcgtcagagaaatattcggatttttctttgccaagatcagatatttctaaggagcaacgtaaatcatgtgatatctgcagacgatttgagaatgt |
33060108 |
T |
|
| Q |
207 |
gttaaatcctatcccagtatgctctggttgcaaggttttaggactcatccctggtcctttt |
267 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33060109 |
gttaaatcctatcctagtctgctctggttgcaaggttttaggactcatccctggtcctttt |
33060169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University