View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_153 (Length: 320)

Name: NF7850A_low_153
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_153
NF7850A_low_153
[»] chr7 (3 HSPs)
chr7 (8-314)||(44650836-44651142)
chr7 (1-33)||(40854554-40854586)
chr7 (1-30)||(35822865-35822894)
[»] chr5 (3 HSPs)
chr5 (1-35)||(38493777-38493811)
chr5 (1-33)||(9168055-9168087)
chr5 (1-33)||(16690651-16690683)
[»] chr8 (7 HSPs)
chr8 (1-33)||(35067312-35067344)
chr8 (1-33)||(41639685-41639717)
chr8 (1-32)||(5574407-5574438)
chr8 (1-30)||(3413083-3413112)
chr8 (1-33)||(6972294-6972326)
chr8 (1-33)||(13971056-13971088)
chr8 (1-33)||(39453204-39453236)
[»] chr3 (7 HSPs)
chr3 (1-33)||(51699010-51699042)
chr3 (1-33)||(52714873-52714905)
chr3 (1-32)||(48353136-48353167)
chr3 (4-33)||(1436971-1437000)
chr3 (1-33)||(29916927-29916959)
chr3 (1-33)||(29966080-29966112)
chr3 (1-29)||(54099248-54099276)
[»] chr2 (9 HSPs)
chr2 (1-33)||(7084602-7084634)
chr2 (1-33)||(19843636-19843668)
chr2 (1-33)||(21738505-21738537)
chr2 (1-33)||(33616607-33616639)
chr2 (2-33)||(26290738-26290769)
chr2 (1-33)||(5361932-5361964)
chr2 (1-33)||(6336390-6336422)
chr2 (1-33)||(40599180-40599212)
chr2 (1-33)||(43658599-43658631)
[»] scaffold0662 (1 HSPs)
scaffold0662 (1-33)||(1296-1328)
[»] chr4 (2 HSPs)
chr4 (1-33)||(16019628-16019660)
chr4 (1-33)||(47015157-47015189)
[»] chr1 (5 HSPs)
chr1 (1-33)||(740853-740885)
chr1 (1-33)||(5771144-5771176)
chr1 (1-33)||(23665625-23665657)
chr1 (1-33)||(29359895-29359927)
chr1 (1-33)||(34817932-34817964)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 44651142 - 44650836
Alignment:
Q  8 aaattgatgttcaaataacattgctccaccgacaattggtgcggtcaccaatatatatttgctactccccctnnnnnnnnnn-tatattgccactcttat 106  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||    
T  44651142 aaattgatgttcaaatatcattgttacaccgacaattggtgcggtcaccaatatatatttgctactccccctcaataaaaaaatatattgccactcttat 44651043  T
Q  107 aaacgtgcatatcgctataaaaatcccaatccaaaaccttaattttgtgacataataataactagtatttatttttgctttagttccacctagctagcta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44651042 aaacgtgcatatcgctataaaaatcccaatccaaaaccttaattt-gtgacataataataactagtatttatttttgatttagttccacctagctagcta 44650944  T
Q  207 gtttatccccttcctctcaacaaacaattcccaactcaaaatcatatggctaattcattgcctttcttgcttattattttcatgcttgtattttcagcca 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44650943 gtttatccccttgctctcaacaaacaattcccaactcaaaatcatatggctaattcattgcctttcttgcttattattttcatgcttgtattttcagcca 44650844  T
Q  307 acaccaaa 314  Q
    ||||||||    
T  44650843 acaccaaa 44650836  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40854586 - 40854554
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  40854586 gtcaaccaaattgatgttcaaataacattgctc 40854554  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35822894 - 35822865
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattg 30  Q
    ||||||||||||||||||||||||||||||    
T  35822894 gtcaaccaaattgatgttcaaataacattg 35822865  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38493777 - 38493811
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctcca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38493777 gtcaaccaaattgatgttcaaataacattgctcca 38493811  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9168087 - 9168055
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  9168087 gtcaaccaaattgatgttcaaataacattgctc 9168055  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16690651 - 16690683
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||| |||||||||||||||||    
T  16690651 gtcaaccaaattgatattcaaataacattgctc 16690683  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35067312 - 35067344
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  35067312 gtcaaccaaattgatgttcaaataacattgctc 35067344  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41639717 - 41639685
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  41639717 gtcaaccaaattgatgttcaaataacattgctc 41639685  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 5574407 - 5574438
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgct 32  Q
    ||||||||||||||||||||||||||||||||    
T  5574407 gtcaaccaaattgatgttcaaataacattgct 5574438  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3413112 - 3413083
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattg 30  Q
    ||||||||||||||||||||||||||||||    
T  3413112 gtcaaccaaattgatgttcaaataacattg 3413083  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6972294 - 6972326
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||| ||||||||||||||||||||||||||    
T  6972294 gtcaactaaattgatgttcaaataacattgctc 6972326  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13971056 - 13971088
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||| ||||||||||||||||||||||    
T  13971056 gtcaaccaaactgatgttcaaataacattgctc 13971088  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39453236 - 39453204
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  39453236 gtcaatcaaattgatgttcaaataacattgctc 39453204  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51699010 - 51699042
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  51699010 gtcaaccaaattgatgttcaaataacattgctc 51699042  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52714873 - 52714905
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  52714873 gtcaaccaaattgatgttcaaataacattgctc 52714905  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48353136 - 48353167
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgct 32  Q
    ||||||||||||||||||||||||||||||||    
T  48353136 gtcaaccaaattgatgttcaaataacattgct 48353167  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 1436971 - 1437000
Alignment:
Q  4 aaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||||||||||||||||||    
T  1436971 aaccaaattgatgttcaaataacattgctc 1437000  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29916959 - 29916927
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||| ||||||    
T  29916959 gtcaaccaaattgatgttcaaataacgttgctc 29916927  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29966112 - 29966080
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||| ||||||    
T  29966112 gtcaaccaaattgatgttcaaataacgttgctc 29966080  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54099276 - 54099248
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacatt 29  Q
    |||||||||||||||||||||||||||||    
T  54099276 gtcaaccaaattgatgttcaaataacatt 54099248  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7084634 - 7084602
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  7084634 gtcaaccaaattgatgttcaaataacattgctc 7084602  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19843636 - 19843668
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  19843636 gtcaaccaaattgatgttcaaataacattgctc 19843668  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21738537 - 21738505
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  21738537 gtcaaccaaattgatgttcaaataacattgctc 21738505  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33616607 - 33616639
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||||||||||||||||||||||||    
T  33616607 gtcaaccaaattgatgttcaaataacattgctc 33616639  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 26290769 - 26290738
Alignment:
Q  2 tcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||||||||||||||||||||    
T  26290769 tcaaccaaattgatgttcaaataacattgctc 26290738  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5361932 - 5361964
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||||||| |||||||||||||    
T  5361932 gtcaaccaaattgatgttcgaataacattgctc 5361964  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6336390 - 6336422
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||||||||||||| |||||||    
T  6336390 gtcaaccaaattgatgttcaaataatattgctc 6336422  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40599212 - 40599180
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||| ||||||||||||||||||||    
T  40599212 gtcaaccaaattaatgttcaaataacattgctc 40599180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43658631 - 43658599
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||||| ||||||||||||||||||||    
T  43658631 gtcaaccaaattaatgttcaaataacattgctc 43658599  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1296 - 1328
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||| ||||||||||||||||||||||    
T  1296 gtcaaccaaactgatgttcaaataacattgctc 1328  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16019628 - 16019660
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  16019628 gtcaatcaaattgatgttcaaataacattgctc 16019660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47015157 - 47015189
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||||||| ||||||||||||||||||||||    
T  47015157 gtcaaccaaactgatgttcaaataacattgctc 47015189  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 740885 - 740853
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  740885 gtcaatcaaattgatgttcaaataacattgctc 740853  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5771176 - 5771144
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  5771176 gtcaatcaaattgatgttcaaataacattgctc 5771144  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23665657 - 23665625
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||||||||||||| |||||||||||||||||    
T  23665657 gtcaaccaaattgatattcaaataacattgctc 23665625  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29359895 - 29359927
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29359895 gtcaatcaaattgatgttcaaataacattgctc 29359927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34817964 - 34817932
Alignment:
Q  1 gtcaaccaaattgatgttcaaataacattgctc 33  Q
    |||||| ||||||||||||||||||||||||||    
T  34817964 gtcaactaaattgatgttcaaataacattgctc 34817932  T

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