View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_16 (Length: 506)
Name: NF7850A_low_16
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 459
Target Start/End: Original strand, 16067704 - 16068165
Alignment:
| Q |
7 |
gggctggtcaataaatactaacttttgcataatgtttttggagaaattaatatggcttgaatcaagtagacaaaatgtgcaaccaaaatatttgtgtaca |
106 |
Q |
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| T |
16067704 |
gggctgatcaataaatactaacttttgcataatgttattggagaaattaatatggcttgaatcaagtagacaaaatgtgcaaccaaaatatttgtgtaca |
16067803 |
T |
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| Q |
107 |
aacaaaatgtgcaaatttgacttagataggtcgatatttcactagtcaaacccactagctagcatgttttatatattagttcatta---------aagtt |
197 |
Q |
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| T |
16067804 |
aacaaaatgtgcaaatttgacttagataggtcgatatttcactagtcaaacccactagctagcatgttttatatattagttcattataaagaattaagtt |
16067903 |
T |
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| Q |
198 |
aatctatactctaaccatatgcaattgttagtacttatgatcttattttacttatctctatactctattgattatttattctaattcatagtttgattca |
297 |
Q |
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| T |
16067904 |
aatctatactctaaccatatgcaattgttagtacttatgatcttattttacttatctctatactctattgattatttattctaattcttagtttgattca |
16068003 |
T |
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| Q |
298 |
acttagctctttatttattgtgtcaaatggtcatgcatgttttaacctattaagaatgttggcgtacccatcatttctcccacatataccttaactttct |
397 |
Q |
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| T |
16068004 |
aattagctctttatttattgtgtcaaatggtcatgcatgttttaacctattaagaatgttggcgtacccatcatttctcccacatgtaccttaactttct |
16068103 |
T |
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| Q |
398 |
atttcttcgttacttgattggtttggtttttgatatagtatgttacttggtgttgagctaaa |
459 |
Q |
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| T |
16068104 |
atttcttcgttacttgattggtttggtttttgatatagtatgttacttggtgttgagctaaa |
16068165 |
T |
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