View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_161 (Length: 315)
Name: NF7850A_low_161
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_161 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 37835456 - 37835170
Alignment:
| Q |
17 |
atcaaatatgaaataagaaagtataaatattgtattccccgaaattaaacttcatagctttttcttctctcttttgctccaaataaccagggaaagaagg |
116 |
Q |
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| T |
37835456 |
atcaaatatgaaataagaaagtataaatattgtattccccaaaattaaacttcatagctttttcttctctcttttgctccaaataaccagggaaagaagg |
37835357 |
T |
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| Q |
117 |
caagtgtaatatgttccaaagcatacgaagaatctaatccttgtgctcaacaaacatacgaagttatggccaacacagaaatggaaacttcccaatcgtc |
216 |
Q |
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| T |
37835356 |
caagtgtaatatgttccaaagaatacgaagaatctaatccttgtgctcaacaaacatacaaagttatggccaacacagaaatggaaacttctcgatcgtc |
37835257 |
T |
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| Q |
217 |
taatcttcatccacatagttaccatattcatttgcaaactaacggtgctcaagcatcagaatgtgaagaagctgaattaggtatatt |
303 |
Q |
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| T |
37835256 |
taatcttcatccacatagttaccatattcatttgcaaactaacggtgctcaagcatcagaatgtgaagaagctgaattaggtatatt |
37835170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 37844199 - 37844147
Alignment:
| Q |
143 |
gaagaatctaatccttgtgctcaacaaacatacgaagttatggccaacacaga |
195 |
Q |
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| T |
37844199 |
gaagaatctaatccttgtgatcaacaatcatacaaagttatgccgaacacaga |
37844147 |
T |
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