View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_162 (Length: 314)

Name: NF7850A_low_162
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_162
NF7850A_low_162
[»] chr3 (1 HSPs)
chr3 (22-314)||(6896254-6896546)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 6896254 - 6896546
Alignment:
Q  22 caataatgtaaaacttaaaagatatcttaatccgaacatagttgtgctcaacaatctcttttggagagttctcgatcattgccccttttacgtttagagt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||| ||||||||||||||||||    
T  6896254 caataatgtaaaacttaaaagatatcttaatccgaacatagttgtgctcaacaatct-tgttggagagttattgatcattgtcccttttacgtttagagt 6896352  T
Q  122 gatcataatgtcattgtccgttcggttttaaagtggtctgcataccatagtcccttccgtttgtgagtggtcttaatgccatatttgtagttgctgagtg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6896353 gatcataatgtcattgtccgttcggttttaaagtggtctgcataccatagtcccttccgtttgtgagtggtcttaatgccatatttgtagttgctgagtg 6896452  T
Q  222 gattctaccatattttaaggtgcaattttattatggatccttcaatgcagtgggagtcctgtac-attttagatgagttgttttatcttggtaa 314  Q
    |||||||||||||||| |||||||||||||| |  |||||| |||||||||||||||||  ||| ||||||| |||||||||||||||||||||    
T  6896453 gattctaccatattttcaggtgcaattttataacagatcctacaatgcagtgggagtccgatacaattttagctgagttgttttatcttggtaa 6896546  T

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