View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_163 (Length: 314)

Name: NF7850A_low_163
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_163
NF7850A_low_163
[»] chr2 (4 HSPs)
chr2 (12-314)||(42153606-42153908)
chr2 (12-111)||(16042689-16042788)
chr2 (25-112)||(25938517-25938604)
chr2 (12-93)||(24346111-24346192)
[»] scaffold0059 (1 HSPs)
scaffold0059 (14-138)||(63947-64071)
[»] chr7 (8 HSPs)
chr7 (12-138)||(17887729-17887855)
chr7 (14-107)||(2505817-2505910)
chr7 (12-94)||(21228432-21228514)
chr7 (12-94)||(21229067-21229149)
chr7 (12-104)||(26133233-26133326)
chr7 (52-104)||(19397960-19398012)
chr7 (79-113)||(10479419-10479453)
chr7 (25-62)||(8068028-8068065)
[»] chr6 (5 HSPs)
chr6 (15-137)||(22536973-22537095)
chr6 (12-112)||(12585844-12585943)
chr6 (25-107)||(20723571-20723653)
chr6 (26-112)||(34395384-34395469)
chr6 (12-127)||(29230160-29230275)
[»] chr3 (5 HSPs)
chr3 (12-136)||(51118481-51118607)
chr3 (72-138)||(23168485-23168551)
chr3 (12-108)||(30510795-30510891)
chr3 (26-107)||(26092891-26092972)
chr3 (25-107)||(25530761-25530843)
[»] chr1 (7 HSPs)
chr1 (25-127)||(21536916-21537018)
chr1 (16-137)||(27912039-27912161)
chr1 (12-60)||(21448734-21448782)
chr1 (12-107)||(10828485-10828580)
chr1 (12-142)||(34104890-34105020)
chr1 (12-108)||(16799521-16799616)
chr1 (26-125)||(20033130-20033229)
[»] chr8 (6 HSPs)
chr8 (12-126)||(20268361-20268475)
chr8 (12-126)||(21054990-21055104)
chr8 (12-136)||(33983085-33983213)
chr8 (12-102)||(26613775-26613865)
chr8 (26-137)||(18836778-18836889)
chr8 (13-63)||(3826173-3826223)
[»] chr5 (6 HSPs)
chr5 (15-140)||(28280257-28280383)
chr5 (12-137)||(29989002-29989127)
chr5 (12-107)||(32415860-32415955)
chr5 (20-106)||(23032645-23032731)
chr5 (12-126)||(20102904-20103017)
chr5 (12-60)||(26271175-26271223)
[»] chr4 (7 HSPs)
chr4 (15-103)||(9739954-9740042)
chr4 (26-138)||(26047144-26047256)
chr4 (26-138)||(26052325-26052437)
chr4 (15-137)||(17661929-17662052)
chr4 (45-137)||(4611510-4611603)
chr4 (14-111)||(20316198-20316294)
chr4 (72-137)||(19335225-19335290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-112)||(369275-369374)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 42153606 - 42153908
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42153606 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatttggaacaaaactaaataaaaatgactgaaaaatatgttaa 42153705  T
Q  112 agttaacggaagatgatctgtcatcaagtaagtaactaggagagaagaaaaatgatgtgcaaagaagatgtagaaaatttttgtgggagaagatccaaat 211  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42153706 aaataacggaagatgatctgtcatcaagtaagtaactaggagagaagaaaaatgatgtgcaaagaagatgtagaaaatttttgtgggagaagatccaaat 42153805  T
Q  212 catagaaattttgaatagaaatgtggtgtcatagtaacatatgatcaattatgaaaaagaaatgtatgatcgtagtggcgagatgaaggacacccaaaca 311  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42153806 cattgaaattttgaatagaaatgtggtgtcatagtaacatatgatcaattatgaaaaagaaacgtatgatcgcagtggcgagatgaaggacacccaaaca 42153905  T
Q  312 tca 314  Q
    |||    
T  42153906 tca 42153908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 16042788 - 16042689
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| ||||| |||||||||| ||||| ||||| |||||| ||  | || | |||| ||||| ||||||||||||| ||||| |||||||||    
T  16042788 atgaaaacattacaaaatatcccgaaaactataggtaattgctctaaagcttctctattttggatcaaaattaaataaaaatgattgaaacatatgttaa 16042689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 25938517 - 25938604
Alignment:
Q  25 aaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaa 112  Q
    |||||||||| ||||||||||||||||| ||||| |||  | || | ||||  ||||||||||||||| |||||||||||||| ||||    
T  25938517 aaaatgtcccaaaaaccataggcaattgctctaatactattctattttggattaaaactaaataaaaaagactgaaaaatatggtaaa 25938604  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 24346192 - 24346111
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaat 93  Q
    |||||||||||| | |||| |||||||| ||||||||| ||||||||| ||| | || | | ||  ||||||||||||||||    
T  24346192 atgaaaacattacataatgccccgaaaatcataggcaagtgttctaaacctcctctacttttgattaaaactaaataaaaat 24346111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 64071 - 63947
Alignment:
Q  14 gaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaag 113  Q
    |||||||||| |||||||||| ||||||| || ||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||| ||||     
T  64071 gaaaacattataaaatgtcccaaaaaccaaagacaattgttctaaaactcctctaatttggatcaaaactaaataaaaatgactgaaaaatatgctaaaa 63972  T
Q  114 ttaacggaagatgatctgtcatcaa 138  Q
     || || || ||||||| |||||||    
T  63971 atagcgtaaaatgatctctcatcaa 63947  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 17887855 - 17887729
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| |||||||||| ||||||||||||||||  |||||||||| | ||   |||| ||||||||| ||||||||||||||||||||| |||    
T  17887855 atgaaaacattacaaaatgtccctaaaaccataggcaatttctctaaaactcctctatcttggatcaaaactaactaaaaatgactgaaaaatatgctaa 17887756  T
Q  112 agttaacggaagatgatctgtcatcaa 138  Q
       ||||| | ||||| ||||||||||    
T  17887755 gaataacgtaggatgacctgtcatcaa 17887729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 2505817 - 2505910
Alignment:
Q  14 gaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    |||||||||  ||||||| ||||||||||||| ||||||||||||||||| | || | |||| | |||||||||||||||||||||||||||||    
T  2505817 gaaaacattgcaaaatgttccgaaaaccatagacaattgttctaaaactcctctattttggatcgaaactaaataaaaatgactgaaaaatatg 2505910  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 21228432 - 21228514
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatg 94  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||| | |||  |||| ||||||||||||||||||    
T  21228432 atgaaaacattaaaaaatgtcccaaaaaccataggcaattgctctaaaactcctgtaacttggatcaaaactaaataaaaatg 21228514  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 21229067 - 21229149
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatg 94  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||| | |||  |||| ||||||||||||||||||    
T  21229067 atgaaaacattaaaaaatgtcccaaaaaccataggcaattgctctaaaactcctgtaacttggatcaaaactaaataaaaatg 21229149  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 26133326 - 26133233
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaact-aaataaaaatgactgaaaaat 104  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||||| ||| |||||  | || ||||||| ||| |||||||| ||||||||    
T  26133326 atgaaaacattacaaaatgtcctgaaaaccatagtcaattcttctaaatctcctataactttgatcaaaactgaaaaaaaaatgattgaaaaat 26133233  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 19398012 - 19397960
Alignment:
Q  52 gttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaat 104  Q
    |||||||||||| | |||| |||| ||||| ||||||||||||||||||||||    
T  19398012 gttctaaaactcctctaatttggatcaaaattaaataaaaatgactgaaaaat 19397960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 10479453 - 10479419
Alignment:
Q  79 aaactaaataaaaatgactgaaaaatatgttaaag 113  Q
    ||||||||||||||||||||||||||||| |||||    
T  10479453 aaactaaataaaaatgactgaaaaatatgctaaag 10479419  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 8068065 - 8068028
Alignment:
Q  25 aaaatgtcccgaaaaccataggcaattgttctaaaact 62  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  8068065 aaaatgtccctaaaaccatatgcaattgttctaaaact 8068028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 22537095 - 22536973
Alignment:
Q  15 aaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaagt 114  Q
    |||||||||||||||||||| ||||| |||| |||| |||||||||||| | |||| | ||  |||||||||||||||| |||||||||||| ||||| |    
T  22537095 aaaacattagaaaatgtcccaaaaactatagacaatagttctaaaactcctctaatttagatgaaaactaaataaaaataactgaaaaatattttaaaat 22536996  T
Q  115 taacggaagatgatctgtcatca 137  Q
    |||   |||||||||| ||||||    
T  22536995 taatataagatgatctatcatca 22536973  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 12585943 - 12585844
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| |||||||||||||||  ||||| |||| ||||||||||| | |||  |||| ||||| |||||||||||||| || ||||||| |||    
T  12585943 atgaaaacattaaaaaatgtcccgaaaatgataggaaattcttctaaaactcctctaacttggatcaaaa-taaataaaaatgacagacaaatatgctaa 12585845  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 20723571 - 20723653
Alignment:
Q  25 aaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    ||||||| || | ||||||| |||||||||||||||||  | |||  ||||  |||||||||||||||||||| ||| |||||    
T  20723571 aaaatgttccaacaaccatatgcaattgttctaaaacttctctaacttggataaaaactaaataaaaatgactaaaatatatg 20723653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 34395469 - 34395384
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaa 112  Q
    |||||||| ||||| |||| ||||||||||||| |||| | || | ||||  |||||||||||||||| ||||||||| ||| ||||    
T  34395469 aaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggattaaaactaaataaaaat-actgaaaaacatgctaaa 34395384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 29230275 - 29230160
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaac-taaataaaaatgactgaaaaatatgtta 110  Q
    |||||||| ||| |||| || || |||||||||| |||||||| ||||  || | |||  |||| |||||| ||||||||| |||||||||||||||||     
T  29230275 atgaaaacgttacaaaaagttccaaaaaccatagacaattgttataaatatcctctaaattggatcaaaacctaaataaaa-tgactgaaaaatatgttg 29230177  T
Q  111 aagttaacggaagatga 127  Q
    ||  ||||| |||||||    
T  29230176 aaaataacgtaagatga 29230160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 51118607 - 51118481
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataa-tctggaacaaaactaaataaaaatgactg-aaaaatatgtt 109  Q
    |||||||||||| || |  ||||||||||||||||||||||||||||||||| | ||| | |||| |||||||||||||||||||||| ||||||||| |    
T  51118607 atgaaaacattacaataattcccgaaaaccataggcaattgttctaaaactcctttaattttggatcaaaactaaataaaaatgactgaaaaaatatgct 51118508  T
Q  110 aaagttaacggaagatgatctgtcatc 136  Q
    |||  ||||| |||||||  |||||||    
T  51118507 aaaaataacgtaagatgacatgtcatc 51118481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 23168551 - 23168485
Alignment:
Q  72 tggaacaaaactaaataaaaatgactgaaaaatatgttaaagttaacggaagatgatctgtcatcaa 138  Q
    |||| |||||||||||||||||||||||||||||||  ||   ||||| ||||||||||||||||||    
T  23168551 tggatcaaaactaaataaaaatgactgaaaaatatgcgaagagtaacgtaagatgatctgtcatcaa 23168485  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 30510795 - 30510891
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgt 108  Q
    |||||||||||| ||||||||||| ||||||||  ||||| ||||||||||| | |||| || | ||||||  ||  ||||||||| ||||||||||    
T  30510795 atgaaaacattacaaaatgtcccgcaaaccataaacaattattctaaaactcctctaatttgtatcaaaacataaccaaaatgacttaaaaatatgt 30510891  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 26092891 - 26092972
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    |||||||||||||||||||| |||||||||||| |||| | || ||| ||  |||||||| | ||||| | |||||||||||    
T  26092891 aaatgtcccgaaaaccatagacaattgttctaatactcctctattctagatgaaaactaactgaaaataattgaaaaatatg 26092972  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 25530843 - 25530761
Alignment:
Q  25 aaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    |||||||||| ||||| |||   | ||||||||| |||| | || | ||||  ||||||||||||||||||||||||||||||    
T  25530843 aaaatgtcccaaaaactataaatagttgttctaatactcctctattttggattaaaactaaataaaaatgactgaaaaatatg 25530761  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 21537018 - 21536916
Alignment:
Q  25 aaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaagttaacggaaga 124  Q
    |||||||||| |||| || ||||||||||| |||||||| |||||| |||| ||||||||| ||||||||||||||||||||| ||||  ||||| ||||    
T  21537018 aaaatgtcccaaaaatcacaggcaattgttttaaaactcctataatttggatcaaaactaactaaaaatgactgaaaaatatgctaaaaataacgtaaga 21536919  T
Q  125 tga 127  Q
    |||    
T  21536918 tga 21536916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 27912039 - 27912161
Alignment:
Q  16 aaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaat-aaaaatgactgaaaaatatgttaaagt 114  Q
    |||||||| ||||||||| ||||| ||||| |||||||||||| |||| | || | ||||  |||||||||| |||||||||||||||| |||||||       
T  27912039 aaacattacaaaatgtcctgaaaatcatagacaattgttctaatactcctctattttggattaaaactaaataaaaaatgactgaaaaacatgttaagaa 27912138  T
Q  115 taacggaagatgatctgtcatca 137  Q
    ||||| |||||||  ||||||||    
T  27912139 taacgtaagatgacatgtcatca 27912161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21448782 - 21448734
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaa 60  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  21448782 atgaaaacattacaaaatgtcccgaaaatcataggcaattgttctaaaa 21448734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 10828485 - 10828580
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    |||||||||||| |||||||||   |||||||| ||||||||||||||||||  ||||| || |  |||||| ||  |||||||||||||||||||    
T  10828485 atgaaaacattacaaaatgtcctttaaaccatatgcaattgttctaaaactccaataatttgaataaaaacttaagtaaaatgactgaaaaatatg 10828580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 34104890 - 34105020
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    ||||||| |||| ||||||| | |||||||| | ||||||||| || || ||   |||  |||| ||||| ||||||||||||| |||||||||| ||||    
T  34104890 atgaaaatattacaaaatgttctgaaaaccacatgcaattgttttataattcccctaacttggatcaaaattaaataaaaatgattgaaaaatatattaa 34104989  T
Q  112 agttaacggaagatgatctgtcatcaagtaa 142  Q
    |  ||||| |||||||  |||||||| ||||    
T  34104990 aaataacgtaagatgacttgtcatcatgtaa 34105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 16799616 - 16799521
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgt 108  Q
    ||||||| |||| |||||| | | |||| |||||||||||| |||||||||| | | |||| | | |||||||||||||||| | ||||||||||||    
T  16799616 atgaaaatattacaaaatgactcaaaaatcataggcaattgctctaaaactcttct-atctaggataaaactaaataaaaattattgaaaaatatgt 16799521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 20033229 - 20033130
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaagttaacggaagat 125  Q
    |||||| |||||||||||||| ||||||||||| |||| | || ||| ||  |||||||| | ||||||  ||||||||||| ||||  ||||| |||||    
T  20033229 aaatgttccgaaaaccataggtaattgttctaatactcctctattcttgattaaaactaactgaaaatggttgaaaaatatgctaaaaataacgtaagat 20033130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 20268361 - 20268475
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| ||||| | ||||||||||||  ||||||||||||||||| | || | | || |||||| |||||||||||| |||||||||||||||    
T  20268361 atgaaaacattacaaaatattccgaaaaccataaccaattgttctaaaactcctctattatagatcaaaaccaaataaaaatgattgaaaaatatgttaa 20268460  T
Q  112 agttaacggaagatg 126  Q
    |  ||||| ||||||    
T  20268461 atataacgcaagatg 20268475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 21054990 - 21055104
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| ||||| | ||||||||||||  ||||||||||||||||| | || | | || |||||| |||||||||||| |||||||||||||||    
T  21054990 atgaaaacattacaaaatattccgaaaaccataaccaattgttctaaaactcctctattatagatcaaaaccaaataaaaatgattgaaaaatatgttaa 21055089  T
Q  112 agttaacggaagatg 126  Q
    |  ||||| ||||||    
T  21055090 atataacgcaagatg 21055104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 33983085 - 33983213
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgt--- 108  Q
    ||||||| |||| ||||||| ||||||||||||||| |||| |||||||||| || ||  | || ||||| |||||||||||||| ||||||||| |       
T  33983085 atgaaaatattacaaaatgttccgaaaaccataggctattgatctaaaactcctacaacttagatcaaaagtaaataaaaatgaccgaaaaatatatatg 33983184  T
Q  109 -taaagttaacggaagatgatctgtcatc 136  Q
     ||||  ||||| ||||||||||||||||    
T  33983185 ctaaaaataacgtaagatgatctgtcatc 33983213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 26613865 - 26613775
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaa 102  Q
    ||||||| |||| ||||| |||| || ||||||||||||| |||||||| || | |||| | ||  |||||||||||||||||||||||||    
T  26613865 atgaaaaaattacaaaatttcccaaataccataggcaattattctaaaattcctctaatttagatgaaaactaaataaaaatgactgaaaa 26613775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 18836778 - 18836889
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaaagttaacggaagat 125  Q
    |||||||| ||||||||||  ||| |||||||| |||| |||| | ||||  |||||||| | ||||||| ||||||| ||| |||   ||| | |||||    
T  18836778 aaatgtcctgaaaaccataaacaaatgttctaatactcctatattatggatgaaaactaacttaaaatgattgaaaaacatgctaagaataatgtaagat 18836877  T
Q  126 gatctgtcatca 137  Q
    ||||||||||||    
T  18836878 gatctgtcatca 18836889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 3826173 - 3826223
Alignment:
Q  13 tgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactc 63  Q
    ||||||||||| ||||||||||  ||||||||| ||| |||||||||||||    
T  3826173 tgaaaacattacaaaatgtcccttaaaccatagacaaatgttctaaaactc 3826223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 28280257 - 28280383
Alignment:
Q  15 aaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgact-gaaaaatatgttaaag 113  Q
    ||||||||| |||||||||| |||||||||| |||||||||||| |||| | || | ||||  ||||||||||||||||||||  ||||||||| ||||     
T  28280257 aaaacattacaaaatgtcccaaaaaccatagacaattgttctaatactcctctattttggattaaaactaaataaaaatgactaaaaaaatatgctaaaa 28280356  T
Q  114 ttaacggaagatgatctgtcatcaagt 140  Q
     ||||| |||||||  |||||||||||    
T  28280357 ataacgtaagatgacatgtcatcaagt 28280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 29989127 - 29989002
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||||||||||| ||||| |||| ||||||||||| ||| | |||||||||| | || |  ||| ||||||||||||||||| ||||||||||||| |||    
T  29989127 atgaaaacattacaaaatatccccaaaaccataggtaatagctctaaaactcctctatttcggatcaaaactaaataaaaattactgaaaaatatgctaa 29989028  T
Q  112 agttaacggaagatgatctgtcatca 137  Q
       ||||| |||||| ||||||||||    
T  29989027 gaataacgtaagatggtctgtcatca 29989002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 32415955 - 32415860
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatg 107  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||| | |||  ||||  ||| || ||||||||| |||||||||||||    
T  32415955 atgaaaacattacaaaatgtcccaaaaaccataggaaattgttctaaaactcctgtaacttggataaaagctgaataaaaattactgaaaaatatg 32415860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 23032645 - 23032731
Alignment:
Q  20 attagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatat 106  Q
    |||| |||||||| |||||||||||| |||||| |||||||||| | || | | || ||||||||||||||||||| ||||||||||    
T  23032645 attacaaaatgtctcgaaaaccatagtcaattgctctaaaactcctctagtttagatcaaaactaaataaaaatgattgaaaaatat 23032731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 20103017 - 20102904
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    ||||||||||||  |||||||||  |||||||| | ||||||||||||| |||| |||| |||  |||| |  || |||||||||||||||||||| |||    
T  20103017 atgaaaacattacgaaatgtcccttaaaccatatgaaattgttctaaaattcatctaat-tgggtcaaatcataacaaaaatgactgaaaaatatgctaa 20102919  T
Q  112 agttaacggaagatg 126  Q
    |  ||||| ||||||    
T  20102918 aaataacgtaagatg 20102904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 26271175 - 26271223
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaa 60  Q
    |||||||||||| |||||| |||  ||||||||| ||||||||||||||    
T  26271175 atgaaaacattacaaaatgacccttaaaccatagacaattgttctaaaa 26271223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 9740042 - 9739954
Alignment:
Q  15 aaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaa 103  Q
    ||||||||| ||||  |||| |||| |||| |||||||||||||||||| | |||| | || ||||||||||||||||||||| |||||    
T  9740042 aaaacattacaaaacatcccaaaaatcatatgcaattgttctaaaactcctctaatttagatcaaaactaaataaaaatgactaaaaaa 9739954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 26047256 - 26047144
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaa-ctaaataaaaatgactgaaaaatatgttaaagttaacggaaga 124  Q
    |||| |||| |||| ||||||||||||||||||||||| | |||  |||| ||||| |||||| |||||||||||||| |||||| ||  ||||| ||||    
T  26047256 aaatatcccaaaaatcataggcaattgttctaaaactcctctaaattggatcaaaatctaaat-aaaatgactgaaaagtatgttgaaaataacgtaaga 26047158  T
Q  125 tgatctgtcatcaa 138  Q
    |||  |||||||||    
T  26047157 tgacatgtcatcaa 26047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 26052437 - 26052325
Alignment:
Q  26 aaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaa-ctaaataaaaatgactgaaaaatatgttaaagttaacggaaga 124  Q
    |||| |||| |||| ||||||||||||||||||||||| | |||  |||| ||||| |||||| |||||||||||||| |||||| ||  ||||| ||||    
T  26052437 aaatatcccaaaaatcataggcaattgttctaaaactcctctaaattggatcaaaatctaaat-aaaatgactgaaaagtatgttgaaaataacgtaaga 26052339  T
Q  125 tgatctgtcatcaa 138  Q
    |||  |||||||||    
T  26052338 tgacatgtcatcaa 26052325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 17661929 - 17662052
Alignment:
Q  15 aaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaat-aaaaatgactgaaaaatatgttaaag 113  Q
    |||||||||  |||||||  ||||| ||||||| |||||||||| |||| | || | ||||  |||||||||| |||||||||||||||||||| | |      
T  17661929 aaaacattatgaaatgtcgagaaaatcataggcgattgttctaatactcctttattttggattaaaactaaataaaaaatgactgaaaaatatgcttaga 17662028  T
Q  114 ttaacggaagatgatctgtcatca 137  Q
     ||||  |||||||||||||||||    
T  17662029 ataacataagatgatctgtcatca 17662052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 4611603 - 4611510
Alignment:
Q  45 ggcaattgttctaaaactcatataatctggaacaaaac-taaataaaaatgactgaaaaatatgttaaagttaacggaagatgatctgtcatca 137  Q
    ||||||||||||||||||| | ||   | || |||||| ||| ||||||||||||||||||||||| ||  ||||| ||||||| |||||||||    
T  4611603 ggcaattgttctaaaactcctctatgtttgatcaaaacataactaaaaatgactgaaaaatatgttgaaaataacgtaagatgacctgtcatca 4611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 20316294 - 20316198
Alignment:
Q  14 gaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    |||| ||||| |||||||||| |||| | |||| |||| |||||| |||||| || | ||||  |||||||||||||||| ||||||||| |||||||    
T  20316294 gaaagcattacaaaatgtccc-aaaatcgtaggaaattattctaatactcatctattttggattaaaactaaataaaaataactgaaaaagatgttaa 20316198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 19335290 - 19335225
Alignment:
Q  72 tggaacaaaactaaataaaaatgactgaaaaatatgttaaagttaacggaagatgatctgtcatca 137  Q
    |||| |||||| || ||||||||||| ||||||||| |||   ||||| |||||||||||||||||    
T  19335290 tggatcaaaacgaactaaaaatgactaaaaaatatgctaagaataacgtaagatgatctgtcatca 19335225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 369374 - 369275
Alignment:
Q  12 atgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatctggaacaaaactaaataaaaatgactgaaaaatatgttaa 111  Q
    ||||||||||| | ||||||  ||||||||||  || ||||||||||||| | |  ||  |||| ||||||||||||||||||||||||||| ||| |||    
T  369374 atgaaaacatt-gcaaatgtttcgaaaaccattagctattgttctaaaacgcttcaaacttggatcaaaactaaataaaaatgactgaaaaacatgctaa 369276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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