View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_165 (Length: 311)
Name: NF7850A_low_165
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_165 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 37195691 - 37195406
Alignment:
| Q |
13 |
attggtgtgcattgaccccgttttaatttaataagtgatgacaaaagtggatgcaaaaagtgacccactttatgcctttttagaggtcctatatgtttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37195691 |
attggtgtgcattgaccccgttttaatttaataagtgatgacaaaagtggatgcaaaaagtgacccactttatgcctttttagaggtcctctatgtttgt |
37195592 |
T |
|
| Q |
113 |
agttactagttagccatctttttcttcttgatggtgaataactgaagatacataaaagtgagtgagcatattttgtcaaaaaatgaaataaaagttagca |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37195591 |
agttactagttagccatctttt---tcttgatggtgaataactgaagatacataaaagtgagtgagcatattttgtcaaaaaatgaaataaaagttagca |
37195495 |
T |
|
| Q |
213 |
tatgactatgcttaatgttgatacgacctgatacgactggtattaaagatactgcctcctgctgttgggatatcttgttttcagtgtatcgacgtttgt |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37195494 |
tatgactatgcttaatgt----------tgatacgactggtattaaagatactgcctcctgctgttgggatatcttgttttcagtgtatcgacgtttgt |
37195406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University