View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_172 (Length: 308)
Name: NF7850A_low_172
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_172 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 1045813 - 1045545
Alignment:
| Q |
25 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacacacagaat |
124 |
Q |
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| T |
1045813 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcaca--cacagaat |
1045716 |
T |
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| Q |
125 |
gtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaatagatt |
224 |
Q |
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| T |
1045715 |
gtttgccaaaaataacagataacaagataaattgaaaaaattaggagc-------------acaatgagttatttattatacttgttaatcgaatagatt |
1045629 |
T |
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| Q |
225 |
caaacagtgaagaaaagatcgtaccgtatagtgagagggtttcgttataattgaattgttttcgcgaagggtagaagcttcgat |
308 |
Q |
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| T |
1045628 |
caaacagtgaagaaaagatcgtaccttatagtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgat |
1045545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 1039345 - 1039303
Alignment:
| Q |
218 |
atagattcaaacagtgaagaaaagatcgtaccgtatagtgaga |
260 |
Q |
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| T |
1039345 |
atagattcaaacagtgaagaaaagaacgtaccgtatcgtgaga |
1039303 |
T |
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