View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_178 (Length: 302)
Name: NF7850A_low_178
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_178 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 43239346 - 43239052
Alignment:
| Q |
8 |
tgaaatgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattat |
107 |
Q |
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| T |
43239346 |
tgaaatgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattat |
43239247 |
T |
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| Q |
108 |
caggttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcatta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43239246 |
caggttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccatta |
43239147 |
T |
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| Q |
208 |
atgatgttaacaattactaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatgaaaacaataaaagaaacataaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43239146 |
atgatgttaacaattactaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatgaaaaaaataaaagaaacataaaa |
43239052 |
T |
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