View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_18 (Length: 495)
Name: NF7850A_low_18
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 28519269 - 28518944
Alignment:
| Q |
17 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
116 |
Q |
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| T |
28519269 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttggcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
28519170 |
T |
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| Q |
117 |
tagcttacggtattgatttttaaacaccaaaagtacttcatccatggctaaacatgcnnnnnnnnnnnnnnnnnnnnnnncaatatctacaaattttaag |
216 |
Q |
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| T |
28519169 |
taacttacggtattgatttttaaacaccaaaagtacttcatccatggctacacatacaaaaaaatattcgaagaaaaaaacaatatctacaaattttaag |
28519070 |
T |
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| Q |
217 |
ctagagaaaaaattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatgg |
316 |
Q |
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| T |
28519069 |
ctagagaaaaaattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatgg |
28518970 |
T |
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| Q |
317 |
actctttggcttcatgataactaagt |
342 |
Q |
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| T |
28518969 |
actctttggcttcatgataactaagt |
28518944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 28518866 - 28518816
Alignment:
| Q |
422 |
taaagaaatgcttgattgaattaataaggttaccttcccttcacagaagat |
472 |
Q |
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| T |
28518866 |
taaagaaatgcttgattgaattaataaggttaccttcccttcacagaagat |
28518816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 12728863 - 12728953
Alignment:
| Q |
240 |
agataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
330 |
Q |
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| T |
12728863 |
agataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttca |
12728953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 34291236 - 34291144
Alignment:
| Q |
238 |
ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
330 |
Q |
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| T |
34291236 |
ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca |
34291144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 12728763 - 12728832
Alignment:
| Q |
65 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggtattgatt |
134 |
Q |
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| T |
12728763 |
ttctcttagctgtcaatggtaatccaataaagtcccatgatcttgttgtgtgtagcttgcggtattgatt |
12728832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 34291425 - 34291362
Alignment:
| Q |
65 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggta |
128 |
Q |
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| T |
34291425 |
ttctcttagctgtcaaaggtaatccaataaaatcccatgatcttgttgtgtgtagcttgcggta |
34291362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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