View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_181 (Length: 302)
Name: NF7850A_low_181
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_181 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 42211721 - 42211435
Alignment:
| Q |
7 |
ttttcaacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211721 |
ttttcaacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaa |
42211622 |
T |
|
| Q |
107 |
ctcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211621 |
ctcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgt |
42211522 |
T |
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| Q |
207 |
gttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagtattat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42211521 |
gttgctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42211435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 42223937 - 42223651
Alignment:
| Q |
7 |
ttttcaacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| || |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
42223937 |
ttttcaacaacttgaaaaacctcactcatttgtatctcagtaagaataatctcacttccactacatcattgaattttcagttctttgattcccttcgaaa |
42223838 |
T |
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| Q |
107 |
ctcaactcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgt |
206 |
Q |
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|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223837 |
ctcaactcagttacaaattcttatggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgt |
42223738 |
T |
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| Q |
207 |
gttgctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagtattat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42223737 |
gttgctaataatcagctaaatggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42223651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 42199146 - 42198885
Alignment:
| Q |
11 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
42199146 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
42199047 |
T |
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| Q |
111 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
210 |
Q |
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||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| ||||||| |
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| T |
42199046 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgttg |
42198947 |
T |
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| Q |
211 |
ctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatcc |
272 |
Q |
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|| |||||||||| | ||||||||||||||| |||||| | || ||||||||||||| |||| |
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| T |
42198946 |
ctcataatcagctgagtggaagcattcctcagggaatgcagaaatttcaaaatctcacatcc |
42198885 |
T |
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