View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_183 (Length: 300)
Name: NF7850A_low_183
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_183 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 147 - 291
Target Start/End: Original strand, 962191 - 962334
Alignment:
| Q |
147 |
tgcgtaaagaaccaaattaaagccatggaatttaaatgtcataataatagcatgtgcaagttgttgcgcatgcaggcttaatctcctaacacaaaaagta |
246 |
Q |
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| T |
962191 |
tgcgtaaagaaccaaattaaagccatggaatttaaatgtcataa---tagcatgtgcaagttgttgcgcatgcatgcttaatctcctaacacaaaaagta |
962287 |
T |
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| Q |
247 |
--acacaagaaattctcctttcacctccatgatcagataagaataat |
291 |
Q |
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| T |
962288 |
acacacaagaaattctcctttcacctccatgatcagataagaataat |
962334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 962008 - 962133
Alignment:
| Q |
19 |
atattattatcaaattctgaattatctacgtgca----tgcatgcattaactttactctcaatttgcatgcacctggaattagaagcatttatatcctta |
114 |
Q |
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| T |
962008 |
atattattatcaaattctgaattatctatgtgcatgcatgcatgcattaactttactctcaatttgcatgtacctggaattagaaggatt--tatcctta |
962105 |
T |
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| Q |
115 |
catttcaaatttcaaatatagtacattc |
142 |
Q |
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| T |
962106 |
catttcaaatttcaaatatagtacattc |
962133 |
T |
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