View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_184 (Length: 300)

Name: NF7850A_low_184
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_184
NF7850A_low_184
[»] chr1 (2 HSPs)
chr1 (7-285)||(50712909-50713187)
chr1 (9-290)||(50718198-50718473)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 50712909 - 50713187
Alignment:
Q  7 aactttgtctttcttaatatatgctacctttgccataattcttgatacnnnnnnntcaactattactgaaaaaactcaatatgaaattacccttttgcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  50712909 aactttgtctttcttaatatatgctacctttgccataattcttgatacaaaaaaatcaactattactgaaaaaactcaatatgaaattacccttttgcta 50713008  T
Q  107 gcagctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtcacatggggatagaaggacaataccattattgtttgcaagttttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50713009 gcagctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtcacatggggatagaaggacaataccattattgtttgcaagttttga 50713108  T
Q  207 ttatgataggttttgttacaacccttatgggaattggttttccaaagagttttttggtatgttttcttcgttctgttag 285  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50713109 ttatgataggtttttttacaacccttatgggaattggttttccaaagagttttttggtatgttttcttcgttctgttag 50713187  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 50718198 - 50718473
Alignment:
Q  9 ctttgtctttcttaatatatgctacctttgccataattcttgatacnnnnnnntcaactattactgaaaaaactcaatatgaaattacccttttgctagc 108  Q
    |||||||||||||| | |||||||| |||||||| ||||||||||        ||||| | ||||   |||| |||| |||||||||||| |||||||||    
T  50718198 ctttgtctttcttagtctatgctacatttgccatgattcttgata---gaaaatcaacaagtact---aaaagtcaaaatgaaattacccatttgctagc 50718291  T
Q  109 agctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtcacatggggatagaaggacaataccattattgtttgcaagttttgatt 208  Q
    ||| |||||||||| |||| ||||||||||| | ||||| ||||||||   ||||||||| |||||||||||||| |||||||   | ||||||||||||    
T  50718292 agcaatagcatttgcacaacaatttcttcttattcatctccattcaagggatcacatgggtatagaaggacaatatcattatttactacaagttttgatt 50718391  T
Q  209 atgataggttttgttacaacccttatgggaattggttttccaaagagttttttggtatgttttcttcgttctgttagaataa 290  Q
      |||  ||||||| |||||||||||||||||||||| ||||| ||| || |||||  ||||| | || |||||||| ||||    
T  50718392 tcgatttgttttgtgacaacccttatgggaattggttatccaatgagcttcttggtgagttttgtgcgatctgttagcataa 50718473  T

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