View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_187 (Length: 299)
Name: NF7850A_low_187
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_187 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 1772519 - 1772783
Alignment:
| Q |
20 |
atcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttccttaccagag |
119 |
Q |
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| T |
1772519 |
atcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttccttaccagag |
1772618 |
T |
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| Q |
120 |
tcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaactt |
219 |
Q |
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| T |
1772619 |
tcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaactt |
1772718 |
T |
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| Q |
220 |
cctccgaaggagcattttccaaaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttga |
299 |
Q |
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| T |
1772719 |
cctccg---------------aaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttga |
1772783 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 2534349 - 2534233
Alignment:
| Q |
123 |
tcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcct |
222 |
Q |
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| T |
2534349 |
tcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtattatctttagatacatcttgaacttcct |
2534250 |
T |
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| Q |
223 |
ccgaaggagcattttcc |
239 |
Q |
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| T |
2534249 |
ctgaagaagcgttttcc |
2534233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 2525604 - 2525689
Alignment:
| Q |
154 |
gaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcctccgaaggagcattttcc |
239 |
Q |
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| T |
2525604 |
gaatctctttggtatcggtaggctcagccgtttcttctgaattatctttagattcatcttgaatttcctcagaatgagcattttcc |
2525689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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