View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_19 (Length: 493)
Name: NF7850A_low_19
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 85 - 483
Target Start/End: Complemental strand, 16067133 - 16066733
Alignment:
| Q |
85 |
aatatttattattagttttccttcaacacttttttcgtagttaactttccttcaacatttgggtcggccacttttgcatagatcaaatttcttggtctcc |
184 |
Q |
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| T |
16067133 |
aatatttattattagttttccttcaacacttttttcgtagttaactttccttcaacatttgggtcggccacttttgcatagatcaaatttcttggtctcc |
16067034 |
T |
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| Q |
185 |
attcatcattctttcaatcaattggcctcaatgctaattaaattcctttttgtgggaatataatctttcaattaagagcagggaataatgaagcacttgt |
284 |
Q |
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| T |
16067033 |
attcatcattctttcaatcaattggcctcaatgctaattaaattcctttttgtgggaatataatctttcaattaagagcagggaataatgaagcacttgt |
16066934 |
T |
|
| Q |
285 |
gcgttgattgccatacatttttggtcatggcaatgtcaattgc--tatgaggatttgggttatggcttagtctgaatatgtgctggaaagtgcaatgctt |
382 |
Q |
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| T |
16066933 |
gcgttgattgccatacatttttggtcatggccatgtcaattgctatatgaggatttgggttatggcttagtctgaatatgtgctggaaagtgcaatgctt |
16066834 |
T |
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| Q |
383 |
ttttaccagctaagaannnnnnnnnnnnnnnnnnnnnncaaaaagtttaattgtcatttaaaatggcaatgaatatgtttaatgtcaaatggctaaccat |
482 |
Q |
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| T |
16066833 |
ttttaccagctaagaattttttgtttttctttatttttcaaaaactttaattgtcatttaaaatggcaatgaatatgtttaatgtcaaatggctaaccat |
16066734 |
T |
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| Q |
483 |
g |
483 |
Q |
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| T |
16066733 |
g |
16066733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16067163 - 16067252
Alignment:
| Q |
1 |
tcaatagattgaacagagggttgccctttcaaaaggaataactatcaattcctctaaaggacagtgaatagtaagtcaaattaaaatatt |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
16067163 |
tcaatagattgaacagagggttgccctttcaaaaggaataactatcaattcctctaaagggtagtgaatagtaagtcaaatttaaatatt |
16067252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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