View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_192 (Length: 296)
Name: NF7850A_low_192
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_192 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 13704473 - 13704215
Alignment:
| Q |
17 |
tcttctgtatcaacaaactcagtaaaatttgcattttcactttcccaattgggacattcattctaataatacccttgtttgtcacatttgtagcattcag |
116 |
Q |
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| T |
13704473 |
tcttctgtatcaccaaactcagtaaaatttgcattttcaatttcccaattgggacattcattctaataatacccttgtttgtcacgtttgtagcattcag |
13704374 |
T |
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| Q |
117 |
ccacttcacttgcctgttttattcttcacgacttctagcaccaataagtcctcttccacacccataactctttctatattcgggcttattcaaagttggt |
216 |
Q |
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| T |
13704373 |
ccagttcacttgcctgttttactcttcacgtcttctagcaccaataagtcctattccacgcctgtaactctttctatagttgggcatattcaaagttggt |
13704274 |
T |
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| Q |
217 |
tcatcatctttctctttattaaatttctttcttgattctttgaaaagcaagcttctttg |
275 |
Q |
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| T |
13704273 |
tcatcatctttctctttatcaaattttgttcttcattctttatcatgcaagcttctttg |
13704215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 24658787 - 24658830
Alignment:
| Q |
40 |
aaaatttgcattttcactttcccaattgggacattcattctaat |
83 |
Q |
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| T |
24658787 |
aaaatttgcattttcactttcccgaatgggacattcattctaat |
24658830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 2610036 - 2610076
Alignment:
| Q |
40 |
aaaatttgcattttcactttcccaattgggacattcattct |
80 |
Q |
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| T |
2610036 |
aaaatttgcatttttactttcccgattgggacattcattct |
2610076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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