View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_199 (Length: 291)

Name: NF7850A_low_199
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_199
NF7850A_low_199
[»] chr5 (1 HSPs)
chr5 (10-291)||(2617800-2618080)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 2618080 - 2617800
Alignment:
Q  10 attattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagataatctactagtacttgtacaacacaatttgttaaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618080 attattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagataatctactagtacttgtacaacacaatttgttaaaga 2617981  T
Q  110 aacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcgtggggctacattaaaaccataaatagcaaatgaataa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2617980 aacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcgtggggctacattaaaaccataaatagcaaatgaat-a 2617882  T
Q  210 aaccattgggtatctatttctacattttgagtaggttaacttgtgttttctattgatcccaatgactaaacaactcatcatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2617881 aaccattgggtatctatttctacattttgagtaggttaacttgtgttttctattgatcccaatgactaaacaactcatcatc 2617800  T

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