View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_205 (Length: 287)
Name: NF7850A_low_205
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_205 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 26130897 - 26130623
Alignment:
| Q |
1 |
tgtgcattctcggataaatatgtctgattttgttcaacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaa |
100 |
Q |
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| T |
26130897 |
tgtgcattctcggataaatatgactgattttgttcaacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaa |
26130798 |
T |
|
| Q |
101 |
tatggtcaaccaatgatgcagactagtttgcgatcactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26130797 |
tatggtcaaccaatgatgcaaactagtttgcgatcactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatga |
26130698 |
T |
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| Q |
201 |
aaagatcaatgcttcttaaaattacagaatgccacgaaatgtctacgtggtatattttcacagtttcaacatatt |
275 |
Q |
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| T |
26130697 |
aaagatcaatgcttcttaaaatgacagaatgccacgaaatgtctacgtggtatattttcacagtttcaaaatatt |
26130623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21428468 - 21428577
Alignment:
| Q |
1 |
tgtgcattctcggataaatatgtctgattttgttcaacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaa |
100 |
Q |
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|||||||||||| || | ||| |||| |||||||||||||| |||| |||||||| ||||||||||||||| ||||| |||||||||||| || || |
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| T |
21428468 |
tgtgcattctcgtattagcatggctgactttgttcaacaattccataggtgtcttacctattttcggtttaggaaaattgaatctgatttccattccaac |
21428567 |
T |
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| Q |
101 |
tatggtcaac |
110 |
Q |
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| T |
21428568 |
tatggtcaac |
21428577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 11010698 - 11010956
Alignment:
| Q |
2 |
gtgcattctcggataaatatgtctgattttgttcaacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaat |
101 |
Q |
| |
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||||||||||||||||| ||| ||| |||||| ||||| || |||| ||| | |||| |||| |||| ||||||||| |||||||| || ||| || | |
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| T |
11010698 |
gtgcattctcggataaacatgactggttttgtgcaacagttccataggtgtttaacat-tttttggttcagggaaattttatctgattaccaatccaatt |
11010796 |
T |
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| Q |
102 |
atggtcaaccaatgatgcagactagtttgcgatcactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaa |
201 |
Q |
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|||||| || |||||||||| ||||| || ||| | |||||||| | | | |||||| || |||| ||| ||| | |||||||| | | |||| |
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| T |
11010797 |
atggtctgcctgtgatgcagaccagtttacgttcattagagaaatctgtggctaatcagtttacgaaggcgatttttcttatgtttcgtaccgtgctgaa |
11010896 |
T |
|
| Q |
202 |
aagatcaatgcttcttaaaattacagaatgccacgaaatgtctacgtggtatattttcac |
261 |
Q |
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||||||| ||||||||| | |||||||| |||| ||||| || | | ||||||||||||| |
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| T |
11010897 |
aagatcattgcttcttagagttacagaaagccaagaaatttccatggggtatattttcac |
11010956 |
T |
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