View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_209 (Length: 286)
Name: NF7850A_low_209
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_209 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 38483871 - 38483684
Alignment:
| Q |
79 |
ccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctg |
178 |
Q |
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| T |
38483871 |
ccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacccg |
38483772 |
T |
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| Q |
179 |
tcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
266 |
Q |
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| T |
38483771 |
tcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
38483684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 30118257 - 30118163
Alignment:
| Q |
95 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca |
189 |
Q |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 30118138 - 30118074
Alignment:
| Q |
202 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
266 |
Q |
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| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaata |
30118074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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