View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_211 (Length: 285)
Name: NF7850A_low_211
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_211 |
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| [»] chr1 (8 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 48585673 - 48585410
Alignment:
| Q |
22 |
cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48585673 |
cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccatt |
48585574 |
T |
|
| Q |
122 |
ttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585573 |
ttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt |
48585474 |
T |
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| Q |
222 |
ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttata |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585473 |
ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttata |
48585410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 48640244 - 48639983
Alignment:
| Q |
24 |
gccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatttt |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| |||||||||||||| |
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| T |
48640244 |
gccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccatttt |
48640145 |
T |
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| Q |
124 |
catgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtttt |
223 |
Q |
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|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48640144 |
catgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgtttt |
48640045 |
T |
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| Q |
224 |
caccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttata |
285 |
Q |
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| T |
48640044 |
caccacttactataactatgtccacaaattaacatctttccctacaaatgaagaaccttata |
48639983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 48661841 - 48661637
Alignment:
| Q |
79 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
178 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
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| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
179 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
278 |
Q |
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|||||||||||||| ||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| ||||||||| ||||||||||| |
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| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa |
48661642 |
T |
|
| Q |
279 |
cctta |
283 |
Q |
| |
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||||| |
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| T |
48661641 |
cctta |
48661637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 48667438 - 48667230
Alignment:
| Q |
77 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
176 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
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| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
177 |
cacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag |
276 |
Q |
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|||||||||||||||| ||| | |||||||||||| |||||||||||||| || |||| | |||||||||||||| |||||||||| ||||||||| |
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| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag |
48667239 |
T |
|
| Q |
277 |
aaccttata |
285 |
Q |
| |
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||||||||| |
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| T |
48667238 |
aaccttata |
48667230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 48618046 - 48618218
Alignment:
| Q |
79 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
178 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
179 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaa |
251 |
Q |
| |
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||||||||||| ||| | ||||| | | || |||||||||| | |||||||||||||| |||||||| |
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| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaa |
48618218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 48629155 - 48628983
Alignment:
| Q |
79 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
178 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
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| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
179 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaa |
251 |
Q |
| |
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| |||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaa |
48628983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 285
Target Start/End: Complemental strand, 48653409 - 48653203
Alignment:
| Q |
79 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
178 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
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| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
179 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
278 |
Q |
| |
|
||||||||||||||||| |||| | | ||| | |||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||| |
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| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa |
48653210 |
T |
|
| Q |
279 |
ccttata |
285 |
Q |
| |
|
||||||| |
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|
| T |
48653209 |
ccttata |
48653203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 11547518 - 11547396
Alignment:
| Q |
81 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
180 |
Q |
| |
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|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
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| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
181 |
atattccttctgttttatcatgg |
203 |
Q |
| |
|
||||||||||||||||| |||| |
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| T |
11547418 |
gtattccttctgttttattatgg |
11547396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
| Q |
79 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
178 |
Q |
| |
|
|||||||||| || ||||||||| ||| | ||||||||| |||| || |||||||||||| ||||||||||||||||| ||| | |||| |
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| T |
19665402 |
tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca |
19665501 |
T |
|
| Q |
179 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactat |
242 |
Q |
| |
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|||||||||||| ||| | ||||| | | ||| ||||||||||||| |||||||||||||| |
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|
| T |
19665502 |
tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat |
19665565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 27228385 - 27228250
Alignment:
| Q |
150 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
249 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| ||||| | | |||| |||||||||| | |||||||||||||| | |||| |
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| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
250 |
aattaacacctttccctacaaatgaagaaccttata |
285 |
Q |
| |
|
|| | || ||||||| | |||| ||||||||||| |
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| T |
27228285 |
aactggtacgtttcccttcgaatgcagaaccttata |
27228250 |
T |
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Back To:
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