View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_215 (Length: 284)
Name: NF7850A_low_215
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_215 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 6976695 - 6976561
Alignment:
| Q |
17 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
116 |
Q |
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| T |
6976695 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
6976596 |
T |
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| Q |
117 |
ccaacctacattaacataataacaactccaaaacc |
151 |
Q |
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| T |
6976595 |
ccaacctacattaacataataacaattccaaaacc |
6976561 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 6957183 - 6957114
Alignment:
| Q |
69 |
acctccttttcattgccataatattgagcacaatctatatgacgatatccaacctacattaacataataa |
138 |
Q |
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| T |
6957183 |
acctccttttcattgccataaatttgagcacaatctatatgacgataaccaacctgcatgaacataataa |
6957114 |
T |
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