View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_216 (Length: 283)
Name: NF7850A_low_216
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_216 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 37195942 - 37195669
Alignment:
| Q |
10 |
atatgaatacagttccttgtcaacatttaataacatgagtcggtaaataacaaaggttagttggaacttttaaccaactagtgcattagaatgtaataca |
109 |
Q |
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| T |
37195942 |
atatgaatacagttccttgtcaacatttaataacatgagtcggtaaataacaaaggttagttagaacttttaaccaactagtgcattagaatgtaataca |
37195843 |
T |
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| Q |
110 |
ataaccttagactcattgaacaagttacctagcttggtcactttcttaccagatgaagaatagtgagaagnnnnnnntagtttaaaataaggcacctaaa |
209 |
Q |
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| T |
37195842 |
ataaccttagactcattgaacaagttacctagcttggtcactttcttaccagatgaagaatagtgagaagaaaaaaatagtttaaaataaggcacctaaa |
37195743 |
T |
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| Q |
210 |
aaggaatacacagtaaacctcatcaatatttgattttaaatgtcgtaaaaaataggtgtgcattgaccccgttt |
283 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
37195742 |
aagcaatacacagtaaacctcatcaatatttgattttaaatgttgtaaaaaattggtgtgcattgaccccgttt |
37195669 |
T |
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