View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_218 (Length: 283)
Name: NF7850A_low_218
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_218 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18802478 - 18802760
Alignment:
| Q |
1 |
tcgactttggtgttatggttgagcgggtgtcccgtcctctaactcaattcttttactttgactgggatcatcgccttcgtcctgaaggtgaggcaaaaat |
100 |
Q |
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| T |
18802478 |
tcgacgttggtgttatggttgagcgggtgttccgtcctctaactcaattcttttacttcgattgggatcatcgcctctgtcttgaaggtgaggcaaaaat |
18802577 |
T |
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| Q |
101 |
ttgtttcctcattagttgaatgcggtgtggagcggtatgcccacaagacgtgtgcaagtacctcgggccagcttccctttgcctcctctaatcttctctt |
200 |
Q |
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| T |
18802578 |
gtgtttcctcattagttgaatgcggtgtggtgcggtatgcccacaagacgtgtggaagtacctcgggtcagcttccctttgcctcctctaatcttatctt |
18802677 |
T |
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| Q |
201 |
caaaccttttaatatgaccctattggcagactccacctgtccattcatctgagggtgttctaccgaagttaaatgtttcttga |
283 |
Q |
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| T |
18802678 |
caaaccttttaatatgaccctattggcggactccacctacccgttcatctaagggtgttctaccgaagtgaaatgttgcttga |
18802760 |
T |
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Target: scaffold0003 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 415540 - 415370
Alignment:
| Q |
113 |
tagttgaatgcggtgtggagcggtatgcccacaagacgtgtgcaagtacctcgggccagcttccctttgcctcctctaatcttctcttcaaaccttttaa |
212 |
Q |
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| T |
415540 |
tagttgaatgcggtgtggtgcggtacgcccacaagacgtgtgggcgttcttcgggccagcttcccattgcctcctctaaccttctcttcaatcctctcag |
415441 |
T |
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| Q |
213 |
tatgaccctattggcagactccacctgtccattcatctgagggtgttctaccgaagttaaatgtttcttga |
283 |
Q |
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| T |
415440 |
taccatcctcttggcggactccagctgtctgttcgtctgagagtgttctaccgaagtgaagtgttgcttga |
415370 |
T |
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