View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_220 (Length: 281)
Name: NF7850A_low_220
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_220 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 2410 - 2592
Alignment:
| Q |
79 |
actagatttggatcacagttaagctatcgtgaggaatgcaaattctattgcatgggggtattgagagagactttcctcaatgttgtaagctatgttgaag |
178 |
Q |
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| T |
2410 |
actagattacgatcacagataagctgtcgtgag-aatgcaaattttattgcatgggggtattgagagagactttcctcaatgttgtaagctatgttgaag |
2508 |
T |
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| Q |
179 |
aaaatctgaaatatcatctttttccaattttatggggggtgaattagttgctaattaaaatgtagttgtaatcagagttttgtt |
262 |
Q |
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| T |
2509 |
aaaatctgaaatatcatctttttccaattttatggggggtgaattacttgctaattaaaatgtagttgtaattagagttttgtt |
2592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 2307 - 2375
Alignment:
| Q |
13 |
aatatattgtgagcataaagcattggtttgttaacagaattaatagaggaccatttttctgcaattact |
81 |
Q |
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| T |
2307 |
aatatattgtgagcataaagcattggtttgttaccaaaattaatacaggaccatttttgtgcaattact |
2375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 6075950 - 6076130
Alignment:
| Q |
83 |
gatttggatcacagttaagctatcgtgaggaatgcaaattctattgcat-gggggtattgagagagactttcctcaatgttgtaagctatgttgaagaaa |
181 |
Q |
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| T |
6075950 |
gatttggatcacagttaggctatcgtgaggaatgcaaattctattgcatggggggcaatgaaagggactttctccaatgttgtaagctatgttgaagaaa |
6076049 |
T |
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| Q |
182 |
atctgaaatatcatctttttccaattttatggggggtgaattagttgc-taattaaaatgtagttgtaatcagagttttgtt |
262 |
Q |
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| T |
6076050 |
ttctgaaatattatcttttt-caattttatggagggtgaattactttcttaattaaaacgtatttttaattagagttttgtt |
6076130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 6075831 - 6075888
Alignment:
| Q |
13 |
aatatattgtgagcataaagcattggtttgttaacagaattaatagaggaccattttt |
70 |
Q |
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| T |
6075831 |
aatatattgtgagcataaagcattggtttgttaccagaattaacagaggaccattttt |
6075888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 5688993 - 5688920
Alignment:
| Q |
13 |
aatatattgtgagcataaagcattggtttgttaac---agaattaatagaggaccatttttctg-caattacta |
82 |
Q |
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| T |
5688993 |
aatatattgtgagcataaagcattggtttgttaccagaagaattaatagaggaccatttttgtgccaattacta |
5688920 |
T |
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