View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_222 (Length: 281)
Name: NF7850A_low_222
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_222 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 30750730 - 30750461
Alignment:
| Q |
6 |
gaacataccccaacaagcatcaataaataatgtagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttgcttcttgctcaccca |
105 |
Q |
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| T |
30750730 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcaccca |
30750631 |
T |
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| Q |
106 |
ttaacatttaaatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
205 |
Q |
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| T |
30750630 |
ttaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
30750531 |
T |
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| Q |
206 |
tctaaaacacatgcatccaatcttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
275 |
Q |
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| T |
30750530 |
tctaaaacacatgcatccaactttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
30750461 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 30760624 - 30760552
Alignment:
| Q |
6 |
gaacataccccaacaagcatcaataaataatgtagcttctctaaattcttgaaaccctaacttcaatccttgc |
78 |
Q |
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| T |
30760624 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 241546 - 241500
Alignment:
| Q |
71 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
117 |
Q |
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| T |
241546 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
241500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 14575829 - 14575875
Alignment:
| Q |
71 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
117 |
Q |
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| T |
14575829 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
14575875 |
T |
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