View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_224 (Length: 279)

Name: NF7850A_low_224
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_224
NF7850A_low_224
[»] chr1 (2 HSPs)
chr1 (20-279)||(23766455-23766715)
chr1 (81-140)||(26272564-26272623)
[»] chr8 (1 HSPs)
chr8 (205-255)||(38073189-38073239)
[»] chr5 (2 HSPs)
chr5 (81-142)||(22584834-22584894)
chr5 (88-116)||(27511772-27511800)
[»] chr4 (1 HSPs)
chr4 (88-117)||(13718930-13718959)
[»] chr7 (1 HSPs)
chr7 (81-117)||(7990824-7990860)
[»] chr3 (1 HSPs)
chr3 (79-123)||(41902796-41902840)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 23766455 - 23766715
Alignment:
Q  20 ggtttaccatgactagtcacttaaatatgcatcgggttgagtcaattgagtttttgataatgagaaatacttacttgaacacaaatacaaataaaaaatg 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||     
T  23766455 ggtttatcatgactagtcacttaaatatgcatcgggttgagtcaattgagtttttgataacgagaaatacttacttgaacacaaacacaaataaaaaatt 23766554  T
Q  120 attaggctcacacatataaat--tgnnnnnnnnnnnnntaattgaataatgtaactaaatatttttctcannnnnnnnnnnnnnnngtgagtgtgtctaa 217  Q
    ||||||| |||||||||||||  |              ||||||||| ||||||||||||||||||||||                ||||||||||||||    
T  23766555 attaggcacacacatataaattataaaaaaaaagaaaataattgaatgatgtaactaaatatttttctca-ttttttttttcatttgtgagtgtgtctaa 23766653  T
Q  218 atatttttcatttacatttgtgtccaagtaagagttgctatgtgataacattccaatcgcat 279  Q
    | ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  23766654 acatttttcatttacatttatgttcaagtaagagttgctctgtgataacattccaatcgcat 23766715  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 26272564 - 26272623
Alignment:
Q  81 gagaaatacttacttgaacacaaatacaaataaaaaatgattaggctcacacatataaat 140  Q
    |||||||| || |||||||||||| ||||||||||||||||||||| |||| | ||||||    
T  26272564 gagaaatatttgcttgaacacaaacacaaataaaaaatgattaggcacacatacataaat 26272623  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 38073189 - 38073239
Alignment:
Q  205 tgagtgtgtctaaatatttttcatttacatttgtgtccaagtaagagttgc 255  Q
    |||||||||||||||||||||||||| |||||||||| | |||||| ||||    
T  38073189 tgagtgtgtctaaatatttttcatttgcatttgtgtcaaggtaagacttgc 38073239  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 22584834 - 22584894
Alignment:
Q  81 gagaaatacttacttgaacacaaatacaaataaaaaatgattaggctcacacatataaattg 142  Q
    |||||||||||||||||| | ||| |||||| |||||||||||||| ||||||  |||||||    
T  22584834 gagaaatacttacttgaatataaacacaaat-aaaaatgattaggcacacacacgtaaattg 22584894  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 27511772 - 27511800
Alignment:
Q  88 acttacttgaacacaaatacaaataaaaa 116  Q
    |||||||||||||||||||||||||||||    
T  27511772 acttacttgaacacaaatacaaataaaaa 27511800  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 13718930 - 13718959
Alignment:
Q  88 acttacttgaacacaaatacaaataaaaaa 117  Q
    ||||||||||||||||||||||||||||||    
T  13718930 acttacttgaacacaaatacaaataaaaaa 13718959  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 7990860 - 7990824
Alignment:
Q  81 gagaaatacttacttgaacacaaatacaaataaaaaa 117  Q
    |||||| |||| |||||||||||||||||||||||||    
T  7990860 gagaaaaacttgcttgaacacaaatacaaataaaaaa 7990824  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 41902796 - 41902840
Alignment:
Q  79 atgagaaatacttacttgaacacaaatacaaataaaaaatgatta 123  Q
    ||||||||||||||||||  |||||| ||||||||||||| ||||    
T  41902796 atgagaaatacttacttggtcacaaacacaaataaaaaataatta 41902840  T

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