View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_225 (Length: 278)
Name: NF7850A_low_225
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_225 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 1516283 - 1516037
Alignment:
| Q |
19 |
agaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgaga |
118 |
Q |
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| T |
1516283 |
agaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgaga |
1516184 |
T |
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| Q |
119 |
ctttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaag |
218 |
Q |
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| T |
1516183 |
ctttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaag |
1516084 |
T |
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| Q |
219 |
gtctcatacacgtatggctgcaggatcatcatcatcatggggtagta |
265 |
Q |
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| T |
1516083 |
gtctcatacacgtatggctgcaggatcatcatcatcatggggtagta |
1516037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 1530513 - 1530267
Alignment:
| Q |
19 |
agaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgaga |
118 |
Q |
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| T |
1530513 |
agaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgaga |
1530414 |
T |
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| Q |
119 |
ctttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaag |
218 |
Q |
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| T |
1530413 |
ctttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaag |
1530314 |
T |
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| Q |
219 |
gtctcatacacgtatggctgcaggatcatcatcatcatggggtagta |
265 |
Q |
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| T |
1530313 |
gtctcatacacgtatggctgcaggatcatcatcatcatggggtagta |
1530267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 37593023 - 37593131
Alignment:
| Q |
23 |
caatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagacttt |
122 |
Q |
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||||||| || ||||||||||||||||| |||||||||| || | ||||||||||||||| || || ||||| | | |||||||||||||| ||||| |
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| T |
37593023 |
caatggcacttcagtatcatcctgatgtgtgtcatgatccttccatgaaagaggaatcaactaaaatatttgttcggttaaatgcagcttatgaaacttt |
37593122 |
T |
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| Q |
123 |
gtcaaatcc |
131 |
Q |
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||| ||||| |
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| T |
37593123 |
gtcgaatcc |
37593131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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