View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_226 (Length: 278)
Name: NF7850A_low_226
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_226 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 1702333 - 1702066
Alignment:
| Q |
5 |
atccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcgatttattaa |
104 |
Q |
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| T |
1702333 |
atccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcgatttattaa |
1702234 |
T |
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| Q |
105 |
atacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgt |
204 |
Q |
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| T |
1702233 |
atacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgt |
1702134 |
T |
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| Q |
205 |
tctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaag |
272 |
Q |
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| T |
1702133 |
tctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaag |
1702066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 5400962 - 5400832
Alignment:
| Q |
112 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
211 |
Q |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
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| Q |
212 |
taccaatatgttcgggagtgtacggtgggct |
242 |
Q |
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| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggct |
5400832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 3541937 - 3541807
Alignment:
| Q |
112 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
211 |
Q |
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| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
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| Q |
212 |
taccaatatgttcgggagtgtacggtgggct |
242 |
Q |
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| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggct |
3541807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
178 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
239 |
Q |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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