View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_23 (Length: 467)
Name: NF7850A_low_23
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Complemental strand, 4982183 - 4981730
Alignment:
| Q |
6 |
aatatccaccataactgagatgcactggaccacatttgttgtgacataaaattgtgaccatgctagatggaacctacaatttgaaaggttacaaaataga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4982183 |
aatatccaccataactgagatgcactggaccacatttgttgtgacataaaattgtgaccatgctagatggaacctacaattagaaaggttacaaaataga |
4982084 |
T |
|
| Q |
106 |
aaaccagagaaaattgagtcggtagtgtgatattaaatatagatatttaattgagcagtgccagtaggtgaaagcaagtagtagtagagaagacatgtat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4982083 |
aaaccagagaaaattgagtcggtagtgtgatattaaatatagatatttaattgagcagtgccagtaggtgaaagcaagtagtagtagagaagacatgtat |
4981984 |
T |
|
| Q |
206 |
ggacccaaatacaatgccctacacacactgcctctaattggaaaagttgtttgtcgttttgggaccgattaatttctcctatcatgtctttccattttca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4981983 |
ggacccaaatacaatgccctacacacactgcctctaattggaaaagttgtttgtcgttttgggaccgattaatttctcctatcatgtctatccattttca |
4981884 |
T |
|
| Q |
306 |
aacttcacgtttcattactttcctccatttgttcgtttctgtatacacaaattatttgaacctgaaaagccgcatccatgggcttattttgcgcttgnnn |
405 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4981883 |
accttcacgtttcattactttccttcatttgtttgtttctgtatacacaaattatttgaacctcaaaagccgcatccatgggcttattttgcgcttgaaa |
4981784 |
T |
|
| Q |
406 |
nnnncaatatagacattggtactatgcttattattgtgttatgttgtctccattg |
460 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4981783 |
aaaacaatatagacatt-gtactatgcttattattgtgttatgttgtctccattg |
4981730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University