View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_230 (Length: 276)
Name: NF7850A_low_230
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_230 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 28734900 - 28734639
Alignment:
| Q |
9 |
cagagatatttccaaagcaaacatcaagctttgaccaccttattcaacactgattgctgaggtcaagctcggtcatagcttaattttggtcaatggtgct |
108 |
Q |
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| T |
28734900 |
cagagatatttccaaagcaaacatcaagctttgaccaccttattcaacactgattgctgaggtcaagctcagtcatagcttaattttggtcaatggtgct |
28734801 |
T |
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| Q |
109 |
tcagctatgcaggactacaaaatctctcaactgtttcacatccctctcaaatctaaaagggtcagtcccttcactgaaattgcttggaaacctcctagcg |
208 |
Q |
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| T |
28734800 |
tcagctatgcaggactacaaaatctctcaactgtttcacatccctctcaaatctaaaagggtcagtcccttcactgaaattgcttggaaacctactagcg |
28734701 |
T |
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| Q |
209 |
gtggaactattaagttcaattgtgatgaatcttctataggggctcacccttgtggggccatt |
270 |
Q |
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| T |
28734700 |
gtggaactattaagttcaattgtgatgaatcttctataggggctcacccttgtggggccatt |
28734639 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 8634570 - 8634481
Alignment:
| Q |
181 |
actgaaattgcttggaaacctcctagcggtggaactattaagttcaattgtgatgaatcttctataggggctcacccttgtggggccatt |
270 |
Q |
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|||||| || |||||| ||||||| ||||| ||| | |||||||||||||||| ||||||| | ||||| ||||||||||| |||||| |
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| T |
8634570 |
actgaagttacttggattcctcctacaggtggtactgtcaagttcaattgtgatggatcttctgttggggcacacccttgtggtgccatt |
8634481 |
T |
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