View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_233 (Length: 274)
Name: NF7850A_low_233
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_233 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 9215544 - 9215419
Alignment:
| Q |
139 |
ctcacaagaaacataagtttagtttcttttttgagaaagttcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9215544 |
ctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatccacaa |
9215445 |
T |
|
| Q |
239 |
aggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
9215444 |
atgtcattccaaatctcacagaataa |
9215419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9215677 - 9215614
Alignment:
| Q |
6 |
agatcagtatatctacacatccatgtttcactcccttttcggttgaataggacctctttagaac |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
9215677 |
agatcagtatatctacacatccatgtttcattccctttttggttgaataggacctctttagaac |
9215614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 25158812 - 25158921
Alignment:
| Q |
145 |
agaaacataagtttagtttcttttttgagaaagttcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtca |
244 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| | |||| |||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
25158812 |
agaaacataagcttagtttcttttttgagaaaattcttaaaccacaatgcagacaacttctggtatcttttcaagccattcttataatcaacaaaggtca |
25158911 |
T |
|
| Q |
245 |
ttccaaatct |
254 |
Q |
| |
|
|||||||||| |
|
|
| T |
25158912 |
ttccaaatct |
25158921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 25253970 - 25253914
Alignment:
| Q |
208 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25253970 |
tatcttttcaaaccatttttgtaatctacaaaggtcattccaaatctcacagtataa |
25253914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 25179001 - 25179095
Alignment:
| Q |
170 |
tgagaaagttcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
||||||| ||||||||||||||| | ||||| || | |||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
25179001 |
tgagaaaattcttgaaccacaatcctgaaagcttttgatatcttttcaaaccatctttgtaatctataaaagtcattccaaatctcacagtataa |
25179095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 25167300 - 25167393
Alignment:
| Q |
171 |
gagaaagttcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
|||||| |||| |||||||||| | || || || | ||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
25167300 |
gagaaaattctggaaccacaatcccgagagcttttgatatcttttcaaaccatttttgtaatctacgaatgtcattccaaatctcacagtataa |
25167393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 30363156 - 30363107
Alignment:
| Q |
208 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcac |
257 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
30363156 |
tatcttttcaagtcattgttgtaatctacaaagttcattccaaacctcac |
30363107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University