View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_235 (Length: 273)
Name: NF7850A_low_235
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_235 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 3316710 - 3316442
Alignment:
| Q |
1 |
ggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgca |
100 |
Q |
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| T |
3316710 |
ggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgca |
3316611 |
T |
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| Q |
101 |
atcccggtgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaatccttctttgttctctaattttccctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3316610 |
atcccggtgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaatccttctttgttctctaattttccttt |
3316511 |
T |
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| Q |
201 |
attaagcacataattaacgttgtaaccattagttttttgtaattgattaattcttgcaccaacaatttg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316510 |
attaagcacataattaacgttgtaaccattagttttttgtaattgattaattcttgcaccaacaatttg |
3316442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 3324020 - 3323752
Alignment:
| Q |
1 |
ggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324020 |
ggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgca |
3323921 |
T |
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| Q |
101 |
atcccggtgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaatccttctttgttctctaattttccctt |
200 |
Q |
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|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3323920 |
atccaggagcattagtactaagcttcataactctccctgatttcttatccataactatagctgcaacctttaatccttcttttttctctaattttccttt |
3323821 |
T |
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| Q |
201 |
attaagcacataattaacgttgtaaccattagttttttgtaattgattaattcttgcaccaacaatttg |
269 |
Q |
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|||||||||||| |||| | |||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
3323820 |
attaagcacatagttaatatcataaccatttgtttttggtaattgattaattcttgtaccaacaatttg |
3323752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 18635485 - 18635543
Alignment:
| Q |
67 |
tcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagctt |
125 |
Q |
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||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
18635485 |
tcattattcacaaacttagcactataaaattacaatccagaagcattagtactaagctt |
18635543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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