View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_24 (Length: 461)
Name: NF7850A_low_24
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 33126445 - 33126730
Alignment:
| Q |
14 |
tactgctgaaacactccaagatagaaatattggtcgtgtcataggagtaagaaggaaggaaaggtgatgattggaaggaagaagcatggttgatgtcgat |
113 |
Q |
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| T |
33126445 |
tactgctgagacactccaagattgaaatattggccgtgtcataggagtaagaag----gaaaggtgatgattggaaggaagaagcatggttgatgccgat |
33126540 |
T |
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| Q |
114 |
gttgaactgaattgtcagagagataaacaatgttgatgttgtcacaattgaccagagtaacttttgtgataggacaatataattctaagagtaggttgtg |
213 |
Q |
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| T |
33126541 |
gttgaactgaattgtcagagagataaacaacgttgatgttgtcacaattgaccagagtaacttttgtgataggacaatataattcaaagagtaggttgtg |
33126640 |
T |
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| Q |
214 |
aagacaacatgatttagacgctacattggctactcctatgtactgtgcttctacgcatgagacaagatatgctgtgtttggtccaaccac |
303 |
Q |
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| T |
33126641 |
aagacaacatgatttagacgctacattggctactcctatgtactgtgcttctacgcatgagacaagatatgttgtgtttggtccaaccac |
33126730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 33126836 - 33126888
Alignment:
| Q |
409 |
cccttcttataataattgaaactaaaaaatactacaactttttaaaaatatat |
461 |
Q |
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| T |
33126836 |
cccttcttataataattgaaactaaaaaatactacaactttttaaaaatatat |
33126888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 33125990 - 33126223
Alignment:
| Q |
33 |
gatagaaatattggtcgtgtcataggagtaagaaggaaggaaaggtgatgattg----gaag--------gaagaagcatggttgatgtcgatgttgaac |
120 |
Q |
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| T |
33125990 |
gatagaaatattgatcgtgtcataggagtcggaaggaaggaaaagtgaagattgaagagaagatttgagagaaaaagcatggttgttgtcgatgttgaac |
33126089 |
T |
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| Q |
121 |
tgaattgtcagagagataaacaatgttgatgttgtcacaattgaccagagtaacttttgtgataggacaatataattctaagagtag-----gttgtgaa |
215 |
Q |
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| T |
33126090 |
gagattgtccgagagataaacaacgttgatgttgtcttaatagaccaaagt-agtttttagaaaggacaatatagttccaagagtaggctgtgatgtgaa |
33126188 |
T |
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| Q |
216 |
gacaacatgatttagacgctacattggctactcct |
250 |
Q |
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| T |
33126189 |
gccaacatgattcagacactacattaactactcct |
33126223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 37526362 - 37526428
Alignment:
| Q |
149 |
atgttgtcacaattgaccagagtaacttttgtgataggacaatataattctaagagtaggttgtgaa |
215 |
Q |
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| T |
37526362 |
atgttgtcacaacataccaaagtagcttttgtgataggacaatatagttccaagagtaagttgtgaa |
37526428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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