View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_241 (Length: 271)

Name: NF7850A_low_241

Description: NF7850A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7850A_low_241

[»] chr1 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 173; E-Value: 4e-93

Query Start/End: Original strand, 13 - 257

Target Start/End: Original strand, 31503278 - 31503521

Alignment:

Q	13	aaaagatgaaagttatttataattgagatcaaaaaagtactcacgatgaaatgcacaacaatttccacacaacaattttaacctatactcataaatcatt	112	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31503278	aaaagttgaaagttgcttataattgagatcaaaggagtactcacgatgaaatacacaacaatttccacacaacaattttaacctatactcataaatcatt	31503377	T

Q	113	caaatgcacgttatatcgagtcatgaaggagtctgttggatcattcacattaggttttgaacaatcacgtaagtgagttagacaccacatcttaacttaa	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31503378	caaatgcacgttatattaggtcatgaaggagtccgttggatcatttacattaggtcttgaacaatcatataagtgagttagacaccacatcttaacttaa	31503477	T

Q	213	aatcttaaacattagatatactgaacatatcctctcatttatata	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31503478	aatcttaaacattagatatacaaaacatat-ctctcatttatata	31503521	T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 157 - 216

Target Start/End: Original strand, 4481591 - 4481650

Alignment:

Q	157	tcacattaggttttgaacaatcacgtaagtgagttagacaccacatcttaacttaaaatc	216	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	4481591	tcacattagtttttgaaaaatcacataagtgaattaaacatcacatcttaacctaaaatc	4481650	T

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