View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_243 (Length: 268)
Name: NF7850A_low_243
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_243 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 24546242 - 24546007
Alignment:
| Q |
18 |
cttttaccccttttactaattacattacaaaattaagctctctattatgatataaatggcatggccataattgcttctgttttcgttctttctacaaacc |
117 |
Q |
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| T |
24546242 |
cttttaccccttttactaattatattacaaaattaagctctctattatgatataaatgacatggccatcattgcttcttttttcgttctttctacaaacc |
24546143 |
T |
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| Q |
118 |
catgaatgcttcttttatttggaccggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaagattagg |
217 |
Q |
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| T |
24546142 |
catgaatgcttctttt-tttggactggtaattccatagtgtttgcttcaatttagagtagactcaaattaacaaagattgacttcatctttaagattagg |
24546044 |
T |
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| Q |
218 |
ctgaagagcctcttattggttttacacttcaattata |
254 |
Q |
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| T |
24546043 |
ctgaagagcctcttattggttttacacttcaattata |
24546007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 722 - 855
Alignment:
| Q |
113 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaag |
211 |
Q |
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| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatt-----tagactcaaatt-agtaagattgacttcatctttaag |
815 |
T |
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| Q |
212 |
attaggctgaagagcctcttattggttttacacttcaatta |
252 |
Q |
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| T |
816 |
attggacttaa-agtctcttataggttttatgcttcaatta |
855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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