View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_251 (Length: 267)
Name: NF7850A_low_251
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_251 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 30573853 - 30574101
Alignment:
| Q |
1 |
gcaacaaaaccaagctttaacattaatgtgattttccacagcagttcggtgggatagtccatatagagttttgctctaactttaaaagggtccccgtaag |
100 |
Q |
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| T |
30573853 |
gcaacaaaaccaagctttcacattaatgtgattttccacagcagttcggtgggatagtccatatagagttttgctctaactttaaaagggtccccacaag |
30573952 |
T |
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| Q |
101 |
tcgatgggggatttgacctttcggattagtcggtccttaggtcacatactgagttttttnnnnnnnnnnnnnnnnnnggaaccggtaagtgagcttcaca |
200 |
Q |
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| T |
30573953 |
tcgatgtgggatttgacctttcggattagtcggtccttaggtcagatattgagtttttt---aaaaataaaaaaaaaggaaccggtaagtgagcttcaca |
30574049 |
T |
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| Q |
201 |
caataaaaccatgaccttttatcggattgttgtattccttcttatgatgtcc |
252 |
Q |
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| T |
30574050 |
caataaaaccatgaccttttatcggattgttgtattccttcttatcatgtcc |
30574101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30570377 - 30570415
Alignment:
| Q |
1 |
gcaacaaaaccaagctttaacattaatgtgattttccac |
39 |
Q |
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| T |
30570377 |
gcaacaaaaccaagctttcacattaatgtgattttccac |
30570415 |
T |
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