View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_259 (Length: 264)
Name: NF7850A_low_259
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_259 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 52385910 - 52386161
Alignment:
| Q |
13 |
agaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaaga |
112 |
Q |
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| T |
52385910 |
agaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaaga |
52386009 |
T |
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| Q |
113 |
gaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagttaaacaaggtttggaaaaccgcaaagctgaagttaaaacagttagccgggtag |
212 |
Q |
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| T |
52386010 |
gaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagttaaacaaggtttggaaaaccgcgaagctgaagttaaaacagttagccgggtag |
52386109 |
T |
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| Q |
213 |
agaggttaacttaccaaccaatggttcgaagacgatgcatgagaggacttct |
264 |
Q |
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| T |
52386110 |
agaggttaacttaccaaccaatggttcgaagacgatgcctgagaggacttct |
52386161 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
44 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
126 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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