View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_260 (Length: 264)
Name: NF7850A_low_260
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_260 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 52982938 - 52982701
Alignment:
| Q |
17 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
116 |
Q |
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| T |
52982938 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtcgacaagaccgtgatctgaaacataagatcgtacgcttatacagtc |
52982839 |
T |
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| Q |
117 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatctctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
216 |
Q |
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| T |
52982838 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatcgctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
52982739 |
T |
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| Q |
217 |
catgttgtttccattattgggtttctcagatatatttt |
254 |
Q |
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| T |
52982738 |
catgtcgtttccattattgggtttctcagatatatttt |
52982701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 55619062 - 55618926
Alignment:
| Q |
17 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
116 |
Q |
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| T |
55619062 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55618963 |
T |
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| Q |
117 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
153 |
Q |
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| T |
55618962 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55618926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 55626366 - 55626230
Alignment:
| Q |
17 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
116 |
Q |
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| T |
55626366 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55626267 |
T |
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| Q |
117 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
153 |
Q |
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| T |
55626266 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55626230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 55657408 - 55657275
Alignment:
| Q |
20 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtctag |
119 |
Q |
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| T |
55657408 |
gagacatattggttggaagatgttgatgagacactacctctaggtcatcgtaaactagatcccaatttgaaacgtaagatcgtacactactacagtcttg |
55657309 |
T |
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| Q |
120 |
ccaacccttggcatgctcgtgtatgtctggaatc |
153 |
Q |
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| T |
55657308 |
ccaccccttggcgtgctcgtgtacgactggaatc |
55657275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 3671105 - 3671055
Alignment:
| Q |
20 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggt |
70 |
Q |
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| T |
3671105 |
gagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt |
3671055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 54630481 - 54630519
Alignment:
| Q |
17 |
ctcgagacatattggttggaagatgaagatgagacacta |
55 |
Q |
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| T |
54630481 |
ctcgagagatattggttggaagatgaagatgagacacta |
54630519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 54860834 - 54860799
Alignment:
| Q |
20 |
gagacatattggttggaagatgaagatgagacacta |
55 |
Q |
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| T |
54860834 |
gagacatattggttggaagatgaagacgagacacta |
54860799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 13403784 - 13403837
Alignment:
| Q |
17 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
70 |
Q |
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| T |
13403784 |
ctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggt |
13403837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 7737104 - 7737035
Alignment:
| Q |
185 |
gaaaaatcgtgggagcggtggaatcgtgcaaacatgttgtttccattattgggtttctcagatatatttt |
254 |
Q |
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||||||||||||||||||||||||| || || ||| | |||| |||||||||||||||||||| |||| |
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| T |
7737104 |
gaaaaatcgtgggagcggtggaatcatgtgaatctgtcgattcctttattgggtttctcagatatgtttt |
7737035 |
T |
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