View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_263 (Length: 263)
Name: NF7850A_low_263
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_263 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 38566802 - 38567064
Alignment:
| Q |
1 |
agaacctgtggcagcttctcaatggatttggcagcgtgtgcaagttcagatgcggatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
100 |
Q |
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| T |
38566802 |
agaacctggggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatctcttcaatcgttgctccatctttaccatatgaaatgt |
38566901 |
T |
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| Q |
101 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
200 |
Q |
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| T |
38566902 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
38567001 |
T |
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| Q |
201 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactt |
263 |
Q |
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| T |
38567002 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataattgtcgactt |
38567064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 38525677 - 38525939
Alignment:
| Q |
1 |
agaacctgtggcagcttctcaatggatttggcagcgtgtgcaagttcagatgcggatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
100 |
Q |
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| T |
38525677 |
agaacctgtggaagtttatcaatgaatttggcggcgtttgcaagttcggatgcagatcttatttcttcaattgttgctccatctttaccatatgcaatgt |
38525776 |
T |
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| Q |
101 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
200 |
Q |
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| T |
38525777 |
tatccttaatgctggatgcaaataacactggctcctggctgacaagaccaattttccctctgatccacctaagctgaagttctttcatgttaattccatc |
38525876 |
T |
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| Q |
201 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactt |
263 |
Q |
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| T |
38525877 |
gataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataactgtggactt |
38525939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 51199554 - 51199513
Alignment:
| Q |
205 |
agaacttcacctgcctgtggatcatagaatctctctaccaaa |
246 |
Q |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaa |
51199513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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