View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_266 (Length: 262)
Name: NF7850A_low_266
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_266 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 18107550 - 18107807
Alignment:
| Q |
4 |
gagtttggtgttgagcatctttgttaaggtatcaggtttaatgaatttcacaagtcttgttcttccattctttcactctctagagaaacaaagtgaataa |
103 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18107550 |
gagtttcgttttgagcatctttgttaaggtatcaggtttaatgaatttcacaagtcttgttcttc-attctttcactctctagagaaacaaagtgaataa |
18107648 |
T |
|
| Q |
104 |
ttgtttttaaacagttgaaaatgctacccggtgctttattttgccactgatgcacaatcttctggttgataatactgcctaatatgaaatataaatgcag |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18107649 |
ttgtttttaaacaattgaaaatgctacccggtgctttattttgccactgatgcacaatcttctggttgataatactgcctaatatgaaatataaatgcag |
18107748 |
T |
|
| Q |
204 |
aaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18107749 |
aaattgaaaatttagaaggtaggtatggatgtactatagtttggaacagtgcaagtttg |
18107807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 18138421 - 18138177
Alignment:
| Q |
14 |
ttgagcatctttgttaaggtatcaggtttaatgaatttcacaagtcttgttcttccattctttcactctctagagaaacaaagtgaataattgtttttaa |
113 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||| || ||||| |
|
|
| T |
18138421 |
ttgagcatctttgttaaagtatcaagttcaatgaatttcacaagtcttgctct-ccattctttcattctttagagaaacaaagtgaataatcgtctttaa |
18138323 |
T |
|
| Q |
114 |
acagttgaaaatgctacccggtgctttattttgccactgatgcacaatcttctggttgataatactgcctaatatgaaatataaatgcagaaattgaaaa |
213 |
Q |
| |
|
| | ||||| ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18138322 |
agacttgaacttgc-acccaatgctttattttgccgctgatgtacaatcttctggtttataatactgcctaataataaatataaatgcagaaattgaaat |
18138224 |
T |
|
| Q |
214 |
tttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtt |
260 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
18138223 |
ttcagaaggtaggtatgaatgtactatagtttggaacagtgcaagtt |
18138177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 18098182 - 18098276
Alignment:
| Q |
159 |
aatcttctggttgataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagt |
253 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
18098182 |
aatcttctggtttataatactgtctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtatcaatgtactatagtttggaacagt |
18098276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 18082887 - 18082957
Alignment:
| Q |
159 |
aatcttctggttgataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtat |
229 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18082887 |
aatcttctgatttataatactgcctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtat |
18082957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 11547683 - 11547626
Alignment:
| Q |
189 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
11547683 |
gaaatataaatgcagaaattggaaatttagaaggtatgtatcaatgtactatagtttg |
11547626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 18098101 - 18098155
Alignment:
| Q |
14 |
ttgagcatctttgttaaggtatcaggtttaatgaatttcacaagtcttgttcttc |
68 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
18098101 |
ttgagcatctttgttaaagtatcaagttcaatgaatttcacaagtcttgctcttc |
18098155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 11552442 - 11552387
Alignment:
| Q |
191 |
aatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
246 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
11552442 |
aatataaatgcagaaattggaaatttaaaaggtacgtatcaatgtactatagtttg |
11552387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University