View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_27 (Length: 444)
Name: NF7850A_low_27
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 26825047 - 26825335
Alignment:
| Q |
16 |
tggacatcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccacctctagttct |
115 |
Q |
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| T |
26825047 |
tggacatcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccacctctagttct |
26825146 |
T |
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| Q |
116 |
agtgggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccacctttggtggcttctgaggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26825147 |
ggtgggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccttctttggtggcttctgaggt |
26825246 |
T |
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| Q |
216 |
atatcttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatgg |
304 |
Q |
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| T |
26825247 |
atatcttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatgg |
26825335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 298 - 444
Target Start/End: Complemental strand, 26825521 - 26825375
Alignment:
| Q |
298 |
ttaatggaacgatgttggggttcatgaaaataatttggaagatggatgtgataatctctaaaaatgatttgaagctatcagtatggactactgatctctt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26825521 |
ttaatggaacgatgttggggttcatgaaaataatttggaagatggatgtgataatctctaaaaatgatttgaagctatcagccaggactactgatctctt |
26825422 |
T |
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| Q |
398 |
agatgattttccaccaatttcattagaagatcctcttgtagtaattg |
444 |
Q |
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| T |
26825421 |
agatgattttccaccaatttcattagaagatcctcttgtagtaattg |
26825375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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