View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_275 (Length: 259)

Name: NF7850A_low_275
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_275
NF7850A_low_275
[»] chr6 (4 HSPs)
chr6 (126-259)||(7326163-7326296)
chr6 (1-45)||(7326481-7326525)
chr6 (45-110)||(7326393-7326453)
chr6 (60-103)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (60-124)||(35130658-35130723)
chr4 (60-110)||(13538317-13538367)
chr4 (61-102)||(49479453-49479494)
chr4 (60-124)||(17882291-17882355)
chr4 (60-123)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (59-103)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (60-124)||(30746010-30746074)
chr7 (60-110)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (59-103)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (63-103)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (58-124)||(32594558-32594625)
chr3 (60-103)||(52093594-52093637)
chr3 (60-103)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (59-93)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 7326296 - 7326163
Alignment:
Q  126 gtgctaatagcttgcgttgtcaatgtgcttgatttttcggtatgaaatgaagctaatttcacttatttgcagcaaacaacattttagattatgccttatt 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7326296 gtgccaatagcttgcgttgtcaatgtgcttgatttttcggtatgaaatgaagctaacttcacttatttgcagcaaacaacattttagattaggccttatt 7326197  T
Q  226 ttgcttttgaaataaaaatacttattttgttata 259  Q
    ||||||||||||||||||||||||||||||||||    
T  7326196 ttgcttttgaaataaaaatacttattttgttata 7326163  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7326525 - 7326481
Alignment:
Q  1 atttatgtcatggaaaaaacattttctgatgccatttttgtttgt 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  7326525 atttatgtcatggaaaaaacatttactgatgccatttttgtttgt 7326481  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 7326453 - 7326393
Alignment:
Q  45 tgaagaaataagtgtgtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg 110  Q
    ||||||||||||||||||||||||||     |||||||||||||| |||| |||||||||| ||||    
T  7326453 tgaagaaataagtgtgtcccgtaagt-----tcagttggtagctaccagggataatttgagcaggg 7326393  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 6922746 - 6922703
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    ||||||||||| |||||||||||||||||| || ||||||||||    
T  6922746 gtcccgtaagtgtagttcagttggtagctaccatgaataatttg 6922703  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 35130723 - 35130658
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagta-gggccggggttcgaacc 124  Q
    ||||||||||| |||||||||||||||||| |||  |||||||| | | |||||||||||||||||    
T  35130723 gtcccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaacc 35130658  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 13538367 - 13538317
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg 110  Q
    ||||||||||| ||| ||||||||||||||||||  |||||||| ||||||    
T  13538367 gtcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggg 13538317  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 49479453 - 49479494
Alignment:
Q  61 tcccgtaagtatagttcagttggtagctatcaggaataattt 102  Q
    |||| ||||| |||||||||||||||||||||| ||||||||    
T  49479453 tcccataagtgtagttcagttggtagctatcagaaataattt 49479494  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 17882355 - 17882291
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagggccggggttcgaacc 124  Q
    ||||||||||| |||||||||| |||||| ||| | |||||||| | |||| | |||||||||||    
T  17882355 gtcccgtaagtgtagttcagttagtagctttcatggataatttgtgcaggggcagggttcgaacc 17882291  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 35010495 - 35010431
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagg-gccggggttcgaac 123  Q
    ||||||||||| ||| ||||||||||||||||||  |||||||| | ||| | ||||||||||||    
T  35010495 gtcccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaac 35010431  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 35852 - 35896
Alignment:
Q  59 tgtcccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||    
T  35852 tgtctcgtaagtatagttcagttggtagctatcagagataatttg 35896  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 30746074 - 30746010
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagggccggggttcgaacc 124  Q
    ||||| ||||||||  |||||||||| ||||||||||||||||| | |||| ||||||| |||||    
T  30746074 gtcccataagtataactcagttggtaactatcaggaataatttgtgcaggggcggggtttgaacc 30746010  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 9667343 - 9667293
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg 110  Q
    ||||||||||| ||| ||||||||||||||||||  |||||||| ||||||    
T  9667343 gtcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggg 9667293  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 24793469 - 24793513
Alignment:
Q  59 tgtcccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||    
T  24793469 tgtctcgtaagtatagttcagttggtagctatcagagataatttg 24793513  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 29097888 - 29097928
Alignment:
Q  63 ccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  29097888 ccgtaagtgtagttcagttggtaactatcaggaataatttg 29097928  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 32594558 - 32594625
Alignment:
Q  58 gtgtcccgtaagtatagttcagttggtagctatcaggaataatttgagtag-ggccggggttcgaacc 124  Q
    |||| |||||||| ||||||||||||||| ||  |||||||||||| |||| || |||||||||||||    
T  32594558 gtgttccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaacc 32594625  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 52093594 - 52093637
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||    
T  52093594 gtcccgtaagtatggctcagttggtagctatcagggataatttg 52093637  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 52093749 - 52093792
Alignment:
Q  60 gtcccgtaagtatagttcagttggtagctatcaggaataatttg 103  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||    
T  52093749 gtcccgtaagtatggctcagttggtagctatcagggataatttg 52093792  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 2276274 - 2276308
Alignment:
Q  59 tgtcccgtaagtatagttcagttggtagctatcag 93  Q
    |||| ||||||||||||||||||||||||||||||    
T  2276274 tgtctcgtaagtatagttcagttggtagctatcag 2276308  T

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