View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_28 (Length: 442)

Name: NF7850A_low_28
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_28
NF7850A_low_28
[»] chr3 (10 HSPs)
chr3 (7-407)||(51942007-51942393)
chr3 (23-355)||(5155224-5155554)
chr3 (24-349)||(46478252-46478575)
chr3 (196-377)||(4582497-4582678)
chr3 (23-132)||(46550107-46550216)
chr3 (24-100)||(46469899-46469975)
chr3 (67-141)||(47398186-47398260)
chr3 (67-104)||(46490237-46490274)
chr3 (23-97)||(47414786-47414860)
chr3 (315-368)||(4614280-4614333)
[»] chr8 (2 HSPs)
chr8 (22-368)||(9677463-9677807)
chr8 (24-366)||(9693206-9693546)
[»] chr4 (4 HSPs)
chr4 (39-350)||(35160480-35160789)
chr4 (24-101)||(35154336-35154413)
chr4 (196-368)||(35154071-35154243)
chr4 (225-283)||(15555098-15555156)
[»] chr2 (3 HSPs)
chr2 (67-120)||(20143699-20143752)
chr2 (67-120)||(20169758-20169811)
chr2 (247-355)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 51942393 - 51942007
Alignment:
Q  7 atatataccttgaacatgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942393 atatataccttgaacatgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttcta 51942294  T
Q  107 tccatacaccatcggcgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatga 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942293 tccatacaccatcgacgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatga 51942194  T
Q  207 tcagttgatttggatcgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcg 306  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||| || |||             |||||||||||| ||||||| |||||| |||    
T  51942193 tcagttgatttggatcgtaggaagtcgagaagttgctgcggtgtgggacaatcaga-------------atgctgagcacaacttgcagagacaatggcg 51942107  T
Q  307 aaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgtttgggttgatcatgaagagacattgttcttacg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  51942106 aaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgttt-ggttggtcatggagagacattgttcttacg 51942008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 355
Target Start/End: Complemental strand, 5155554 - 5155224
Alignment:
Q  23 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 122  Q
    |||||||||| |||  ||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| | |    
T  5155554 tgaaatcaacagaaagcaaagtggccttataatcagaggacacgatttctttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgac 5155455  T
Q  123 gaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatc 222  Q
    ||||||||   |||||||||| |  | |||||||||| |||||||   | ||||||||| || ||||| || | ||||||||| ||||| ||||||||      
T  5155454 gaaggagaatcgaggtccacctgtgggagcagcgtcgaagagcac--gacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggaca 5155357  T
Q  223 gtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgtt 322  Q
    | |||||||| ||||| || ||  |||||||||| | ||||||||||||||| ||||| || ||| |||| || |||| | ||||||| || ||||| ||    
T  5155356 ggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 5155257  T
Q  323 ttctgattgttttgagaacaaatgtttggcgat 355  Q
     ||| ||| |||  |||||| ||||||||||||    
T  5155256 gtctaattctttcaagaacagatgtttggcgat 5155224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 46478575 - 46478252
Alignment:
Q  24 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 123  Q
    |||||||||||||| |||||  || ||| | | ||  |||| |||||||| ||||||||||||||||||||||||||  || | ||| ||||| ||| ||    
T  46478575 gaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacccaaacaccgtcgacg 46478476  T
Q  124 aaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcg 223  Q
    || |||||| |||| |||||||| | || ||||||||||||   |  |  ||||| |||||||| |||| ||||||||||||||| || ||||||||| |    
T  46478475 aaagagaggagaggaccaccggcgggagaagcgtcggagag--gatgacggaaacgagctgtgaagcgaagtagttgagatgatcggtggatttggattg 46478378  T
Q  224 taggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttt 323  Q
     |||||||  | |||||| ||  | |||||||| | ||| |||| |||||| || || |||||| |||| || || | | | ||||| |||||||||||     
T  46478377 aaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagtgaaagtggagaaaacacgatgttgttg 46478278  T
Q  324 tctgattgttttgagaacaaatgttt 349  Q
    ||||||| ||| ||||| | ||||||    
T  46478277 tctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 4582497 - 4582678
Alignment:
Q  196 agttgagatgatcagttgatttggatcgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcag 295  Q
    |||||||||||||||||||||||||  | |||||||| ||||| || |  | |||||| || | ||||||||||||||||||||||||| || |||| ||    
T  4582497 agttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggag 4582596  T
Q  296 ggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgtttgg 377  Q
     || | | | ||||| || ||||| || ||||||| ||||||||| | || ||||||||||||||||||||||  |||||||    
T  4582597 cgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttgg 4582678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 46550107 - 46550216
Alignment:
Q  23 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 122  Q
    |||||||||| |||||||||||||||||||| ||||  | |||  ||| ||  ||||||||||||||||||||||||| ||| |||||  |||||| | |    
T  46550107 tgaaatcaactgaagccaaagtggccttataatcagtagccatagttttttcaaaggaaggttgaagagaaagggtttgttcaatccacgcaccattgac 46550206  T
Q  123 gaaggagagg 132  Q
    ||| ||||||    
T  46550207 gaaagagagg 46550216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 46469975 - 46469899
Alignment:
Q  24 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttt 100  Q
    |||||||||||||||||||||||| ||||| ||||    |||  ||| |||||||||||||||||||||||||||||    
T  46469975 gaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggttt 46469899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 47398186 - 47398260
Alignment:
Q  67 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggtcca 141  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| || |||| | |||| |||||| ||||||||    
T  47398186 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggcgaggtcca 47398260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 46490274 - 46490237
Alignment:
Q  67 atttgtttgaaggaaggttgaagagaaagggttttttc 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46490274 atttgtttgaaggaaggttgaagagaaagggttttttc 46490237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 47414786 - 47414860
Alignment:
Q  23 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaaggg 97  Q
    ||||||| ||||||| ||||| ||||||||| ||||   | | |||||||||||||||||||| |||||||||||    
T  47414786 tgaaatctacggaagacaaagcggccttataatcaggatagacgatttgtttgaaggaaggtttaagagaaaggg 47414860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 4614280 - 4614333
Alignment:
Q  315 atgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 368  Q
    ||||| || ||||||| ||||||||| | |||||||||||||||||||||||||    
T  4614280 atgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaact 4614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 9677463 - 9677807
Alignment:
Q  22 atgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgg 121  Q
    ||||||||||| ||||| | |||||||||||| || |  |||||| ||| || |||||||||||||||||||||| |||| || | ||||||||||| ||    
T  9677463 atgaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaaaggtttttctccacccatacaccattgg 9677562  T
Q  122 cgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggat 221  Q
    |||| |||||| |||| ||||||| |||||| || ||   |||   |  | |||||  || || ||| ||| | |||||||||||||  | |||||| |     
T  9677563 cgaaagagaggcgaggaccaccggaagaagctgcatctttgag--gaggacagaaaggagatgagagacgaaggagttgagatgatcgatggatttgaaa 9677660  T
Q  222 cgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgt 321  Q
    || |||||||| ||||| || ||  | || ||||| | ||||||||||||||| || ||||| ||| |||| || |||||| | |||||||||| |||||    
T  9677661 cggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgt 9677760  T
Q  322 tttctgattgttttgagaacaaatgtttggcgattctgagggaaact 368  Q
    | ||||||| ||||||||| | |||||||||||   |||||||||||    
T  9677761 tgtctgattcttttgagaagagatgtttggcgaccgtgagggaaact 9677807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 9693206 - 9693546
Alignment:
Q  24 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 123  Q
    ||||||||| |||| |||||  |||||||| ||||  |||||| ||| |||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  9693206 gaaatcaacagaagacaaagcagccttataatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctacccacacaccattggcg 9693305  T
Q  124 aaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcg 223  Q
    || ||||||||||| ||||||| |||||  |||||   |||   |  | | |||  || || ||| | | | |||||||||||||  | |||||| | ||    
T  9693306 aaagagaggtgaggaccaccggaagaagttgcgtctttgag--gaggacataaaggagatgagagacaaagaagttgagatgatcgatggatttgaaacg 9693403  T
Q  224 taggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttt 323  Q
     |||||||| ||||| || ||  | || ||||| | ||||||| ||||||| |||||||| ||| |||| || |||||| | ||||||||||  || ||     
T  9693404 gaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttg 9693503  T
Q  324 tctgattgttttgagaacaaatgtttggcgattctgagggaaa 366  Q
    ||||||| ||||||||| | ||||||||||||  |||||||||    
T  9693504 tctgattcttttgagaagagatgtttggcgatggtgagggaaa 9693546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 350
Target Start/End: Complemental strand, 35160789 - 35160480
Alignment:
Q  39 caaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggt 138  Q
    ||||||||||||||| ||    |||| ||||||||||||||||| ||||||||||||||||||||| | ||| ||||| ||| |||| |||||||||||     
T  35160789 caaagtggccttataatcttcagacacgatttgtttgaaggaagattgaagagaaagggttttttccagccaaacaccgtcgacgaaagagaggtgagga 35160690  T
Q  139 ccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggc-gaggtagttgagatgatcagttgatttggatcgtaggaagtctagaa 237  Q
    ||||||| ||||| ||||||   ||| |  ||   ||||   | || ||| | |||| |||||||||||||||| |||||| | || |||||||| ||||    
T  35160689 ccaccggaagaagtagcgtctttgaggatgat--ggaaagttgatgagagactgagg-agttgagatgatcagtggatttgaaacggaggaagtcaagaa 35160593  T
Q  238 gttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttga 337  Q
    | || ||  |||| | ||| | ||||||||||| ||| |||||||||||| |||| || |||||| ||||||| |||||||| |||||||||| ||| ||    
T  35160592 gctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttgga 35160493  T
Q  338 gaacaaatgtttg 350  Q
    ||| | |||||||    
T  35160492 gaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 35154413 - 35154336
Alignment:
Q  24 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggtttt 101  Q
    ||||||||| |||| |||||||||||| || || |  | || ||| |||||||||||||||||| |||||||||||||    
T  35154413 gaaatcaacagaagacaaagtggccttgtaatcggtagtcacgatatgtttgaaggaaggttgaggagaaagggtttt 35154336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 368
Target Start/End: Complemental strand, 35154243 - 35154071
Alignment:
Q  196 agttgagatgatcagttgatttggatcgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcag 295  Q
    ||||||||||||  |  |||||| || | |||||||  ||||| || || ||||||| ||| | ||||||||||||||| ||    |||||  |||| ||    
T  35154243 agttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggag 35154144  T
Q  296 ggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 368  Q
     |||||  ||||||| ||||| || ||||||||||  |||||||| | ||||||||||||  |||||||||||    
T  35154143 agacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaact 35154071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 15555156 - 15555098
Alignment:
Q  225 aggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgag 283  Q
    |||||||| |||||||| ||| |||||| ||| | ||||||||||||||| ||||||||    
T  15555156 aggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 20143752 - 20143699
Alignment:
Q  67 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 120  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20143752 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20143699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 20169758 - 20169811
Alignment:
Q  67 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 120  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20169758 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20169811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 20154488 - 20154380
Alignment:
Q  247 gtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatg 346  Q
    |||||||||| | ||||||||||||| | | ||||| |||| |||| || |||| | ||||||| || ||||| || |||||||||||  |||||| |||    
T  20154488 gtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgtttcaagaacagatg 20154389  T
Q  347 tttggcgat 355  Q
    |||||||||    
T  20154388 tttggcgat 20154380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University