View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_288 (Length: 253)
Name: NF7850A_low_288
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_288 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 24741621 - 24741734
Alignment:
| Q |
135 |
tttgatgtacgtgagagaagaagaataatataattt-atgttttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttgg |
233 |
Q |
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|||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
24741621 |
tttgatgtacgtgaga--agaagaagaatataatttcatgttttaatcaatcagttttgtggtgtactgaagaaatggggaggtgcagtagtaagcttgg |
24741718 |
T |
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| Q |
234 |
aaacaaaattaaaata |
249 |
Q |
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|||||| ||||||||| |
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| T |
24741719 |
aaacaacattaaaata |
24741734 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 24741521 - 24741588
Alignment:
| Q |
21 |
agttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagcttttt |
88 |
Q |
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| T |
24741521 |
agttgatgttctttgttggaaactgagtattgtacgcgagaagaagtacaattgatgttaagcctttt |
24741588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 32996801 - 32996902
Alignment:
| Q |
149 |
gagaagaagaataatataattt-atgttttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaa |
247 |
Q |
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| T |
32996801 |
gagaagaagaagaatataatttcatgttttaatcaatcagttttgtggtgtaatggagaaatggggaggtgcagtagtaagcttggaaataacattaaaa |
32996900 |
T |
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| Q |
248 |
ta |
249 |
Q |
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|| |
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| T |
32996901 |
ta |
32996902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 32996680 - 32996759
Alignment:
| Q |
12 |
gagatgaagagttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagctttttctg |
91 |
Q |
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| T |
32996680 |
gagaagaagagttgatgttctttgttggaaactgagtattttacgcgagaagaagaacagttgatgttaagctttttctg |
32996759 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 25876712 - 25876639
Alignment:
| Q |
176 |
ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaata |
249 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25876712 |
ttaatcaatcagttttgtggtgtaatggggaaatggggaggtgcagtagtaagcttggaaacaacattaaaata |
25876639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 7424421 - 7424494
Alignment:
| Q |
176 |
ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaata |
249 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
7424421 |
ttaatcaatcagttttgtggtgtaatgcggaaatggggaggtgcagtagtaagtttggaaagaacattaaaata |
7424494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 24549643 - 24549714
Alignment:
| Q |
17 |
gaagagttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagcttttt |
88 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
24549643 |
gaagagttgatgttctttgttcgaaactgagtagggtacgcgagaagaagaatagttgatgttaagcttttt |
24549714 |
T |
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 42544678 - 42544605
Alignment:
| Q |
176 |
ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaata |
249 |
Q |
| |
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|||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42544678 |
ttaatcaatcagttttatggtgtaatggggaaatggggaggtgcagtagtaagcttggaaacaacattaaaata |
42544605 |
T |
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