View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_297 (Length: 251)

Name: NF7850A_low_297
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_297
NF7850A_low_297
[»] chr3 (4 HSPs)
chr3 (1-85)||(7779307-7779391)
chr3 (179-224)||(7779169-7779214)
chr3 (9-84)||(8713718-8713794)
chr3 (9-84)||(9065605-9065681)
[»] chr1 (2 HSPs)
chr1 (15-85)||(25664714-25664784)
chr1 (16-85)||(25132538-25132608)
[»] chr8 (1 HSPs)
chr8 (15-71)||(13581725-13581781)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7779391 - 7779307
Alignment:
Q  1 tggcgttgttgttggggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag 85  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  7779391 tggcgttgttgttggggattgttgatatttcgacaaggtaatcaatagaatttattttgtcaataattaggctaggttaggtaag 7779307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 7779214 - 7779169
Alignment:
Q  179 cacgtccttctatcctcacttttaattgtgttaacacatagctccc 224  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  7779214 cacgtccttctatcctcacttttaattgtgttaacaaatagctccc 7779169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 8713794 - 8713718
Alignment:
Q  9 ttgttggggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaa 84  Q
    |||| ||||||| |||||||| |||||| ||||||  |||| |||||||| || | |||||||| ||||||||||||    
T  8713794 ttgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa 8713718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 9065681 - 9065605
Alignment:
Q  9 ttgttggggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaa 84  Q
    |||| ||||||| |||||||| |||||| ||||||  |||| |||||||| || | |||||||| ||||||||||||    
T  9065681 ttgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa 9065605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 25664784 - 25664714
Alignment:
Q  15 gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag 85  Q
    |||||| ||||||||||||||| ||||||  |||| |||||||||| |||||||||  |||||||||||||    
T  25664784 gggattgttgatatttcgacaaggtaatcggtagaatttattttgtgaataattagcttaggttaggtaag 25664714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 25132608 - 25132538
Alignment:
Q  16 ggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaag 85  Q
    ||||| |||||||||| |||| ||||||| |||| |||||||| || |||||||||  |||||||||||||    
T  25132608 ggattgttgatatttcaacaaggtaatcagtagaatttatttttgtgaataattagtttaggttaggtaag 25132538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 13581781 - 13581725
Alignment:
Q  15 gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattagg 71  Q
    |||||| |||||||||||| ||  ||||||||||| |||||||||| ||||||||||    
T  13581781 gggattgttgatatttcgaaaagttaatcaatagaatttattttgtgaataattagg 13581725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University