View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_299 (Length: 251)
Name: NF7850A_low_299
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_299 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 33346236 - 33346033
Alignment:
| Q |
24 |
caaagaaaatacctttaatttacttggcagcaaattctggtgcccgtttaggtgttgccgaggcagtcaaagcttgtttcaaagttggttggtctgagga |
123 |
Q |
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| T |
33346236 |
caaagaaaatacctttaatttacttggcagcaaattctggtgcccgtttaggtgttgccgaggaagtcaaagcttgtttcaaagttggttggtctgagga |
33346137 |
T |
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| Q |
124 |
atctaaacctgagcatggttttcagtatgtatctttaacacctgaggattatgctcggatcggatcatcagtgatggcacatgaattaaaacttgaaagt |
223 |
Q |
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| T |
33346136 |
atctaaacccgagcatggttttcagtatgtatatttaacacctgaggattatgctcgaatcggatcatcagtgatggcacatgaattaaaacttgaaagt |
33346037 |
T |
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| Q |
224 |
ggag |
227 |
Q |
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|||| |
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| T |
33346036 |
ggag |
33346033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 33321112 - 33320911
Alignment:
| Q |
26 |
aagaaaatacctttaatttacttggcagcaaattctggtgcccgtttaggtgttgccgaggcagtcaaagcttgtttcaaagttggttggtctgaggaat |
125 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||| |||||||| || |||| ||||||||||||||||| ||| ||||||| |||||||| |
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| T |
33321112 |
aagaaaatacctttaatttacttagcagcaagttctggtgcccggttaggtgtggcagaggaagtcaaagcttgtttcagagtcggttggtttgaggaat |
33321013 |
T |
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| Q |
126 |
ctaaacctgagcatggttttcagtatgtatctttaacacctgaggattatgctcggatcggatcatcagtgatggcacatgaattaaaacttgaaagtgg |
225 |
Q |
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|||| |||||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||||| |||||||||||||||||||| |||||||||| |
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| T |
33321012 |
ctaatcctgagcatggttttcgctatgtatatttaacacctgaggattatgttcgaattagatcatccgtgatggcacatgaattaaagattgaaagtgg |
33320913 |
T |
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| Q |
226 |
ag |
227 |
Q |
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|| |
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| T |
33320912 |
ag |
33320911 |
T |
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