View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_30 (Length: 441)

Name: NF7850A_low_30
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_30
NF7850A_low_30
[»] chr3 (14 HSPs)
chr3 (20-441)||(5484450-5484869)
chr3 (202-441)||(5525676-5525913)
chr3 (262-441)||(5828164-5828344)
chr3 (260-441)||(5502897-5503076)
chr3 (260-441)||(5490083-5490263)
chr3 (262-438)||(5454907-5455083)
chr3 (264-441)||(20343528-20343706)
chr3 (260-431)||(5446346-5446517)
chr3 (284-431)||(5854204-5854351)
chr3 (331-441)||(5848893-5849003)
chr3 (330-441)||(5802496-5802607)
chr3 (144-208)||(5525588-5525652)
chr3 (22-82)||(5525497-5525557)
chr3 (20-88)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (260-431)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 5484450 - 5484869
Alignment:
Q  20 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  120 gaattattaatgccgcgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  220 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgt 319  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  320 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaacca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||| ||||||||||||||| |||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaacca 5484847  T
Q  420 aagtaagcagccgctcccacca 441  Q
    |||||||||||| |||||||||    
T  5484848 aagtaagcagccactcccacca 5484869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 202 - 441
Target Start/End: Original strand, 5525676 - 5525913
Alignment:
Q  202 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgac 301  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaat--gtgctatatatctaac 5525773  T
Q  302 tgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtc 401  Q
    |||| ||  |||||||||  | |||| | |||||||||||||||||||||||||  |||||||||||||||||||||   |||||||| |||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtc 5525873  T
Q  402 cacagtgttgccaaaccaaagtaagcagccgctcccacca 441  Q
    |||| |||||  |||||||||||||||||| |||||||||    
T  5525874 cacaatgttgttaaaccaaagtaagcagccactcccacca 5525913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 262 - 441
Target Start/End: Complemental strand, 5828344 - 5828164
Alignment:
Q  262 acaaatgatgaa-ataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgt 360  Q
    ||||||| |||| ||| |||||||||| | ||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  5828344 acaaatgctgaatatatataaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatgcgagtcgt 5828245  T
Q  361 atgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagccgctcccacca 441  Q
    ||||||||||||||||||   |||||||| ||||||||||||||| | |||  |||||||||||||||||| |||||||||    
T  5828244 atgtaaatgtcttgtcctacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccacca 5828164  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 260 - 441
Target Start/End: Original strand, 5502897 - 5503076
Alignment:
Q  260 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 359  Q
    ||||||||| |||||||  ||||||| |||  ||||||| ||||||  || |||||||||  | | |||||||||||||||| |||||||||||||||||    
T  5502897 acacaaatggtgaaatatgtaaatttatgc--tatatctaactgaaaggacaaaatatgtaatagcaaatgaaaataccaagctctgaagatgccagccg 5502994  T
Q  360 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagccgctcccacca 441  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||||||||||||||||| |||||||||    
T  5502995 tatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccacca 5503076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 260 - 441
Target Start/End: Original strand, 5490083 - 5490263
Alignment:
Q  260 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 359  Q
    ||||||||| |||||||  ||||||| ||| |||||||| |||||| ||| |||||||||  |  ||||||||||||||||||||||||||||||| |||    
T  5490083 acacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccg 5490181  T
Q  360 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagccgctcccacca 441  Q
    ||||||||||||||||||||| ||  |||| ||||||||||||||| |||||  ||||||||||| |||||| |||||||||    
T  5490182 tatgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgttaaaccaaagtatgcagccactcccacca 5490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 438
Target Start/End: Original strand, 5454907 - 5455083
Alignment:
Q  262 acaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgta 361  Q
    ||||||| ||||||| |||| ||| ||| |||||||| |||||| ||| |||||||||  |  |||| |||||||||||||||||||||||||| |||||    
T  5454907 acaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgta 5455006  T
Q  362 tgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagccgctccca 438  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||| |||||  ||||||||||| |||||| ||||||    
T  5455007 tgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgtgaaaccaaagtatgcagccactccca 5455083  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 264 - 441
Target Start/End: Original strand, 20343528 - 20343706
Alignment:
Q  264 aaatgatgaaataaat-aaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtat 362  Q
    ||||| ||||||| || ||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||||||| ||||||||    
T  20343528 aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtat 20343627  T
Q  363 gtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagccgctcccacca 441  Q
     ||||||||||||||||| ||  |||| ||||||||||||| | | ||| |||||||||||||||| || |||||||||    
T  20343628 ataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcaaccactcccacca 20343706  T

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Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 431
Target Start/End: Original strand, 5446346 - 5446517
Alignment:
Q  260 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 359  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 5446445  T
Q  360 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagcc 431  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||| ||| | ||||||| |||||||||||    
T  5446446 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 5446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 284 - 431
Target Start/End: Complemental strand, 5854351 - 5854204
Alignment:
Q  284 ttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatc 383  Q
    |||||| ||||||| ||||||| ||  |||| ||||  | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5854351 ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc 5854252  T
Q  384 aggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagcc 431  Q
     ||||| |||||||| || ||| ||||| |||||||||||||||||||    
T  5854251 tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagcc 5854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 441
Target Start/End: Complemental strand, 5849003 - 5848893
Alignment:
Q  331 aaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagc 430  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||   |||||||| ||||||||||||||| |||||  |||||||||||||||||    
T  5849003 aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagc 5848904  T
Q  431 cgctcccacca 441  Q
    | |||||||||    
T  5848903 cactcccacca 5848893  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 5802607 - 5802496
Alignment:
Q  330 gaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcag 429  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||   || ||||| ||||||||||||| | | |||  ||||||||||||||||    
T  5802607 gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag 5802508  T
Q  430 ccgctcccacca 441  Q
    || || ||||||    
T  5802507 ccactaccacca 5802496  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  144 atgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgtttt 208  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  22 agtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagata 82  Q
    |||| ||| |||||||| |||||||||  | |||||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 20343322 - 20343390
Alignment:
Q  20 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaag 88  Q
    |||||| ||| |||||||| |||||||||  | ||||| |||||||||||||| |||||| || |||||    
T  20343322 caagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaag 20343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 431
Target Start/End: Complemental strand, 25809466 - 25809295
Alignment:
Q  260 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 359  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 25809367  T
Q  360 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacagtgttgccaaaccaaagtaagcagcc 431  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||| ||| | ||||||| |||||||||||    
T  25809366 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 25809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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