View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_301 (Length: 250)
Name: NF7850A_low_301
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_301 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 3530848 - 3531072
Alignment:
| Q |
18 |
atctagtgcacttaatcgtatgagatacacatttgttttgtacgttaaatacatataaagagatgtatttgnnnnnnnagaggaagagatgtattagtat |
117 |
Q |
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| T |
3530848 |
atctagtgcacttaatcgtatgagatacacatttgttttgtacgttaaatgcatataaagagatgtatttgtttctttagaggaagagatgtattagtat |
3530947 |
T |
|
| Q |
118 |
tgacaatggaaaacgcatacaatattttaaaaatatgtatcaagccatttgtaatttataggaattcaggtattaagtatttaatttatttaatgtgatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530948 |
tgacaatggaaaacgcatacaatattttaaaaatatgtatcaagccatttgtaatttataggaattcaggtattaagtatttaatttatttaatgtgatg |
3531047 |
T |
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| Q |
218 |
atagtaaaactttataatatttttc |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
3531048 |
atagtaaaactttataatatttttc |
3531072 |
T |
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