View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_303 (Length: 250)
Name: NF7850A_low_303
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_303 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 242
Target Start/End: Original strand, 7650304 - 7650516
Alignment:
| Q |
31 |
aagtattgtgccacattttctgtgtccaaataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatctcagtcaaaccaaaagttaac |
130 |
Q |
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| T |
7650304 |
aagtattgtgccccattttgtgggtccaaataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatatcagtcaaaccaaaagttaac |
7650403 |
T |
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| Q |
131 |
atgccacatggcatagttaaaatagggtgttagaaaagatagaagtctctgaagacacccatggttgccaaata-ccccctaatatactttccccttttt |
229 |
Q |
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| T |
7650404 |
atgccacatggcatagttaaaatagggtgttagaaaagatagaagtctctgaagacacccatggttgccaaatacccccctgatatactttccccttttt |
7650503 |
T |
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| Q |
230 |
gttcatattcttg |
242 |
Q |
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| T |
7650504 |
gttcatattcttg |
7650516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 7654516 - 7654608
Alignment:
| Q |
44 |
cattttctgtgtccaaataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatctcagtcaaaccaaaagtt-aacatgcca |
136 |
Q |
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|||||| ||||||||| |||||||||| ||||||| ||||||| |||||||| ||||||||||| || || | || |||||||| ||||||||| |
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| T |
7654516 |
cattttgtgtgtccaa-taacacgaaaatttgttacattgtgtgttagaaagattctcatagaaacttagccgaaacaaaagttgaacatgcca |
7654608 |
T |
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